RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 HPS1Q92902 700 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 IP6K3Q96PC2 410 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 TAAR9Q96RI9 348 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 SLC22A4Q9H015 551 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 CDH20Q9HBT6 801 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 CNOT2Q9NZN8 540 aaKnown RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 EXTL2Q9UBQ6 330 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 MIA3Q5JRA6 1907 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 KDM4EB2RXH2 506 aaPredicted RBP6.84□□□□□ -1.32
SYNE1-213ENST00000448038 SYT7O43581 403 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 FOXD2O60548 495 aaPredicted RBP6.84□□□□□ -1.32
SYNE1-213ENST00000448038 MRPL33O75394 65 aaKnown RBP6.84□□□□□ -1.32
SYNE1-213ENST00000448038 HOXB3P14651 431 aaPredicted RBP6.84□□□□□ -1.32
SYNE1-213ENST00000448038 FASLGP48023 281 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 P2RX1P51575 399 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 NCS1P62166 190 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 TGFBR3Q03167 851 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 DUSP8Q13202 625 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 FCRL6Q6DN72 434 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 PRICKLE2Q7Z3G6 844 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 SPARTQ8N0X7 666 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 ARMC10Q8N2F6 343 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 AMER3Q8N944 861 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 ZSCAN4Q8NAM6 433 aaPredicted RBP6.84□□□□□ -1.32
SYNE1-213ENST00000448038 OR1L3Q8NH93 324 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 PLEKHA6Q9Y2H5 1048 aa6.84□□□□□ -1.32
SYNE1-213ENST00000448038 A6NLC8 198 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 A8MVM7 634 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 DLGAP1O14490 977 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 RAD1O60671 282 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 CCNKO75909 580 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 ACP2P11117 423 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 C21orf33P30042 268 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-213ENST00000448038 BCAP31P51572 246 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 CAPZA1P52907 286 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF91Q05481 1191 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 LRRN1Q6UXK5 716 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 GRINAQ7Z429 371 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 OR4F15Q8NGB8 312 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 MED20Q9H944 212 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 ENAMQ9NRM1 1142 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 MTRF1O75570 445 aaKnown RBP6.83□□□□□ -1.32
SYNE1-213ENST00000448038 STK17BO94768 372 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 EML2O95834 649 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 CRHBPP24387 322 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 SOX3P41225 446 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 CLDN17P56750 224 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 COL28A1Q2UY09 1125 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 SCGB2B2Q4G0G5 96 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 OLFML2AQ68BL7 652 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF322Q6U7Q0 402 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-213ENST00000448038 PRSS41Q7RTY9 318 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 CAMKMTQ7Z624 323 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 NKAIN4Q8IVV8 208 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 WACQ9BTA9 647 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 NXF5Q9H1B4 397 aaKnown RBP6.83□□□□□ -1.32
SYNE1-213ENST00000448038 PRDM6Q9NQX0 595 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 CORINQ9Y5Q5 1042 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 RALGAPA2Q2PPJ7 1873 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 H7C1C5 153 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 PIP5K1CO60331 668 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 SLC19A2O60779 497 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 TFPTP0C1Z6 253 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF26P17031 533 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-213ENST00000448038 FPR3P25089 353 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 PSMB10P40306 273 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 POU3F4P49335 361 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 GPR85P60893 370 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 LCN6P62502 163 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 STK11Q15831 433 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 ELP5Q8TE02 316 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 GGHQ92820 318 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 SLC41A2Q96JW4 573 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 FAM71F1Q96KD3 344 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-213ENST00000448038 NECAB3Q96P71 396 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-213ENST00000448038 ATG5Q9H1Y0 275 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 BCL2L10Q9HD36 194 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 POLHQ9Y253 713 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 RAB3BP20337 219 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 CARD18P57730 90 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 IL11RAQ14626 422 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 ABCA11PQ4W5N1 156 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 VN1R4Q7Z5H5 301 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 PTOV1Q86YD1 416 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 ZADH2Q8N4Q0 377 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 DEFB124Q8NES8 71 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 SLC7A13Q8TCU3 470 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF566Q969W8 418 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 TMIGD2Q96BF3 282 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 C4orf36Q96KX1 117 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 SMURF1Q9HCE7 757 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 FAM60AQ9NP50 221 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 MED17Q9NVC6 651 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 WIF1Q9Y5W5 379 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 SCN5AQ14524 2016 aa6.83□□□□□ -1.32
SYNE1-213ENST00000448038 A0A1B0GTQ1 180 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 ICOSLGO75144 302 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 MT-CO3P00414 261 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 MMP11P24347 488 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 GRK5P34947 590 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms