RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 COQ10BQ9H8M1 238 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 TAS2R16Q9NYV7 291 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 P2RX2Q9UBL9 471 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 GIMAP2Q9UG22 337 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 POU2F3Q9UKI9 436 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 LAMP3Q9UQV4 416 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 AMDHD2Q9Y303 409 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 IFT52Q9Y366 437 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 TACC2O95359 2948 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 HIVEP1P15822 2718 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 CFAP73A6NFT4 308 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 OR5H1A6NKK0 313 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 ESPNB1AK53 854 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 RFXANKO14593 260 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 SMAD7O15105 426 aaKnown RBP6.88□□□□□ -1.31
CD44-211ENST00000442151 ITM2AO43736 263 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 FCMRO60667 390 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 VAMP5O95183 116 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 IFNA2P01563 188 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 PGRP06401 933 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 GPIP06744 558 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 ZCCHC18P0CG32 403 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 SHC1P29353 583 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 SLC1A3P43003 542 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 IDH2P48735 452 aaKnown RBP6.88□□□□□ -1.31
CD44-211ENST00000442151 SLC16A1P53985 500 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 ZNF844Q08AG5 666 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 TOMM34Q15785 309 aaPredicted RBP6.88□□□□□ -1.31
CD44-211ENST00000442151 TUSC1Q2TAM9 212 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 FAM174BQ3ZCQ3 159 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 PDCD4Q53EL6 469 aaKnown RBP6.88□□□□□ -1.31
CD44-211ENST00000442151 TNFAIP8L2Q6P589 184 aaPredicted RBP6.88□□□□□ -1.31
CD44-211ENST00000442151 C17orf78Q8N4C9 275 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 FAM71CQ8NEG0 241 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 C1orf162Q8NEQ5 155 aaPredicted RBP6.88□□□□□ -1.31
CD44-211ENST00000442151 ITCHQ96J02 903 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 NUF2Q9BZD4 464 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 EVA1AQ9H8M9 152 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 OBP2BQ9NPH6 170 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 CISD1Q9NZ45 108 aaKnown RBP6.88□□□□□ -1.31
CD44-211ENST00000442151 DCTN4Q9UJW0 460 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 PMF1-BGLAPU3KQ54 211 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 MED12Q93074 2177 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 PCNX3Q9H6A9 2034 aa6.88□□□□□ -1.31
CD44-211ENST00000442151 TMED7-TICAM2A0A0A6YYA0 188 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 IGHV3-15A0A0B4J1V0 119 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 A0A0G2JPF8 293 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 AGAP5A6NIR3 686 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 HNRNPCL2B2RXH8 293 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 ZNF814B7Z6K7 855 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 HNRNPCL3B7ZW38 293 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 OVOL3O00110 214 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 SMAD9O15198 467 aaKnown RBP6.87□□□□□ -1.31
CD44-211ENST00000442151 TLX2O43763 284 aaPredicted RBP6.87□□□□□ -1.31
CD44-211ENST00000442151 HNRNPCL1O60812 293 aaKnown RBP6.87□□□□□ -1.31
CD44-211ENST00000442151 SLC22A3O75751 556 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 KRT33AO76009 404 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 H6PDO95479 791 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 CSF3P09919 207 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 HNRNPCL4P0DMR1 293 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 NID1P14543 1247 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 BGNP21810 368 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 RYKP34925 604 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 CRISP3P54108 245 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 PRPS1P60891 318 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 RPS26P62854 115 aaKnown RBP6.87□□□□□ -1.31
CD44-211ENST00000442151 VEZF1Q14119 521 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 LIN52Q52LA3 116 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 SPANXN4Q5MJ08 99 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 NXNQ6DKJ4 435 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 ANKRD46Q86W74 232 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 ADGRG3Q86Y34 549 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 ZNF433Q8N7K0 673 aaPredicted RBP6.87□□□□□ -1.31
CD44-211ENST00000442151 POMGNT2Q8NAT1 580 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 IGFBPL1Q8WX77 278 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 SLC35B4Q969S0 331 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 PPP1R36Q96LQ0 422 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 ZNF317Q96PQ6 595 aaPredicted RBP6.87□□□□□ -1.31
CD44-211ENST00000442151 NPAS1Q99742 590 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 DHRS9Q9BPW9 319 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 KCNS3Q9BQ31 491 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 CCDC106Q9BWC9 280 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 QRSL1Q9H0R6 528 aaKnown RBP6.87□□□□□ -1.31
CD44-211ENST00000442151 CTPS2Q9NRF8 586 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 AIG1Q9NVV5 245 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 ZIM2Q9NZV7 527 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 RAB21Q9UL25 225 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 TMED7Q9Y3B3 224 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 DSCAMO60469 2012 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 SCN2BO60939 215 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 LYZL6O75951 148 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 PLAUP00749 431 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 THBS1P07996 1170 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 CREB1P16220 341 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 NCF2P19878 526 aaPredicted RBP6.87□□□□□ -1.31
CD44-211ENST00000442151 COX5AP20674 150 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 IGHV1-2P23083 117 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 PPIBP23284 216 aaKnown RBP6.87□□□□□ -1.31
CD44-211ENST00000442151 CDH11P55287 796 aa6.87□□□□□ -1.31
CD44-211ENST00000442151 STX1BP61266 288 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms