RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 HERPUD1Q15011 391 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 SPATA46Q5T0L3 261 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 ZSCAN25Q6NSZ9 544 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 PMF1Q6P1K2 205 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 CCDC137Q6PK04 289 aaKnown RBP2.48□□□□□ -2.01
VPS41-207ENST00000439468 FAM220AQ7Z4H9 259 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 HSD17B13Q7Z5P4 300 aaPredicted RBP2.48□□□□□ -2.01
VPS41-207ENST00000439468 MOB3BQ86TA1 216 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 LCA5Q86VQ0 697 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 SKA3Q8IX90 412 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 OR2L13Q8N349 312 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 OR10A7Q8NGE5 316 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 EMG1Q92979 244 aaKnown RBP2.48□□□□□ -2.01
VPS41-207ENST00000439468 C16orf74Q96GX8 76 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 C7orf34Q96L11 122 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 PGLYRP4Q96LB8 373 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 ZNF670Q9BS34 389 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 CRACR2AQ9BSW2 395 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 SRXN1Q9BYN0 137 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 VCX2Q9H322 139 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 POPDC2Q9HBU9 364 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 HOXC10Q9NYD6 342 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 AIPL1Q9NZN9 384 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 PIPOXQ9P0Z9 390 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 NPIPA1Q9UND3 350 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 PLLPQ9Y342 182 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 TIMM10BQ9Y5J6 103 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 KIF25-AS1Q9Y6Z4 181 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 KIF14Q15058 1648 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 ABCA6Q8N139 1617 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 THSD7BQ9C0I4 1608 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 BIVM-ERCC5R4GMW8 1640 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 PTCH1Q13635 1447 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 NPATQ14207 1427 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 C9orf84Q5VXU9 1444 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 JCADQ9P266 1359 aa2.48□□□□□ -2.01
VPS41-207ENST00000439468 AGLP35573 1532 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 MYOM1P52179 1685 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 CLTCQ00610 1675 aaKnown RBP2.47□□□□□ -2.01
VPS41-207ENST00000439468 RREB1Q92766 1687 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 TTC21BQ7Z4L5 1316 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 MED14O60244 1454 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 DENND4BO75064 1496 aaPredicted RBP2.47□□□□□ -2.01
VPS41-207ENST00000439468 AHDC1Q5TGY3 1603 aaPredicted RBP2.47□□□□□ -2.01
VPS41-207ENST00000439468 IGKV1D-8A0A087WSZ0 117 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 B4DXG7 233 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 TAPBPO15533 448 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 OR10H3O60404 316 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 HCN1O60741 890 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 TBL1XO60907 577 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 SLITRK3O94933 977 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 OPN1MWP04001 364 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 SEMG1P04279 462 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 ZNF853P0CG23 659 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 OPN1MW2P0DN77 364 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 OPN1MW3P0DN78 364 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 PSMB1P20618 241 aaKnown RBP2.47□□□□□ -2.01
VPS41-207ENST00000439468 GCAP28676 217 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 CASP4P49662 377 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 EFNA3P52797 238 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 ACTR1AP61163 376 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 CSTF1Q05048 431 aaKnown RBP2.47□□□□□ -2.01
VPS41-207ENST00000439468 SLC10A7Q0GE19 358 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 CHIT1Q13231 466 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 ZNF79Q15937 498 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 KYAT1Q16773 422 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 GPRC6AQ5T6X5 926 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 LCE3AQ5TA76 89 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 UQCC3Q6UW78 93 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 DNM1P46Q6ZS02 220 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 ACOT7LQ6ZUV0 252 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 CCDC80Q76M96 950 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 DEFB132Q7Z7B7 95 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 NRMQ8IXM6 262 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 TMEM252Q8N6L7 170 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 Q8N7P7 452 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 SYT14Q8NB59 555 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 STEAP2Q8NFT2 490 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 FAM110BQ8TC76 370 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 SLC5A11Q8WWX8 675 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 FGF11Q92914 225 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 NEIL2Q969S2 332 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 FGGYQ96C11 551 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 ZIM3Q96PE6 472 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 TECTBQ96PL2 329 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 PSKH2Q96QS6 385 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 NPAS2Q99743 824 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 GAL3ST1Q99999 423 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 CNPY3Q9BT09 278 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 NAT10Q9H0A0 1025 aaKnown RBP2.47□□□□□ -2.01
VPS41-207ENST00000439468 EHD1Q9H4M9 534 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 ISG20L2Q9H9L3 353 aaKnown RBP2.47□□□□□ -2.01
VPS41-207ENST00000439468 POLE4Q9NR33 117 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 NANSQ9NR45 359 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 SMOXQ9NWM0 555 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 RPH3ALQ9UNE2 315 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 POLDIP2Q9Y2S7 368 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 NUP188Q5SRE5 1749 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 TNRQ92752 1358 aa2.47□□□□□ -2.01
VPS41-207ENST00000439468 ATP10AO60312 1499 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms