RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GKN3PP0CG01 181 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 CD1CP29017 333 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 GALNSP34059 522 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 TAS2R43P59537 309 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 SCN1BQ07699 218 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 ZNF141Q15928 474 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.6□□□□□ -0.23
USP4-203ENST00000415188 MZT2AQ6P582 158 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 INO80CQ6PI98 192 aaPredicted RBP13.6□□□□□ -0.23
USP4-203ENST00000415188 SHFQ7M4L6 423 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 ZNF761Q86XN6 746 aaPredicted RBP13.6□□□□□ -0.23
USP4-203ENST00000415188 GPALPP1Q8IXQ4 340 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 LSMEM1Q8N8F7 131 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 RCBTB1Q8NDN9 531 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 ATP6V1C2Q8NEY4 427 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 BBS1Q8NFJ9 593 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 DNAJA4Q8WW22 397 aaPredicted RBP13.6□□□□□ -0.23
USP4-203ENST00000415188 SPRYD4Q8WW59 207 aaPredicted RBP13.6□□□□□ -0.23
USP4-203ENST00000415188 TMEM203Q969S6 136 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 TCTN2Q96GX1 697 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 ZNF426Q9BUY5 554 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 FBXO34Q9NWN3 711 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 FOXJ2Q9P0K8 574 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 ADAM30Q9UKF2 790 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 ITGB1BP2Q9UKP3 347 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 SIGLEC7Q9Y286 467 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 SLC35A3Q9Y2D2 325 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 SCN2AQ99250 2005 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 A0A1W2PQL4 384 aaPredicted RBP13.59□□□□□ -0.23
USP4-203ENST00000415188 HTR3EA5X5Y0 456 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 PRR23D1E9PI22 279 aaPredicted RBP13.59□□□□□ -0.23
USP4-203ENST00000415188 CLDN4O14493 209 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 EFSO43281 561 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 PTP4A3O75365 173 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 RGS9O75916 674 aaPredicted RBP13.59□□□□□ -0.23
USP4-203ENST00000415188 NSA2O95478 260 aaKnown RBP13.59□□□□□ -0.23
USP4-203ENST00000415188 IFNGP01579 166 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 PRR23D2P0DMB1 279 aaPredicted RBP13.59□□□□□ -0.23
USP4-203ENST00000415188 CCL4P13236 92 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 SPNP16150 400 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 S1PR1P21453 382 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 SLC6A6P31641 620 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 CSF2RBP32927 897 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 FASLGP48023 281 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 FXYD6P3P58550 94 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 ACTC1P68032 377 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 ACTA1P68133 377 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 MXD1Q05195 221 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 C19orf57Q0VDD7 668 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 POU4F2Q12837 409 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 ASAH1Q13510 395 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 FAM53BQ14153 422 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 ZNF79Q15937 498 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 PLBD1Q6P4A8 553 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 ARHGAP11AQ6P4F7 1023 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 EGFL6Q8IUX8 553 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 LSM14AQ8ND56 463 aaKnown RBP13.59□□□□□ -0.23
USP4-203ENST00000415188 OR9A4Q8NGU2 314 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 PFN4Q8NHR9 129 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 TTC9Q92623 222 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 EFHD2Q96C19 240 aaPredicted RBP13.59□□□□□ -0.23
USP4-203ENST00000415188 CCDC74BQ96LY2 380 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 ZNF285Q96NJ3 590 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 CCNL2Q96S94 520 aaPredicted RBP13.59□□□□□ -0.23
USP4-203ENST00000415188 CMKLR1Q99788 373 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 TM9SF2Q99805 663 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 G6PC3Q9BUM1 346 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 CHRNA10Q9GZZ6 450 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 KCNN2Q9H2S1 579 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 MIXL1Q9H2W2 232 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 ABCB9Q9NP78 766 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 HAO2Q9NYQ3 351 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 TBC1D24Q9ULP9 559 aa13.59□□□□□ -0.23
USP4-203ENST00000415188 YARS2Q9Y2Z4 477 aaKnown RBP13.59□□□□□ -0.23
USP4-203ENST00000415188 NPIPA5A0A0B4J1W7 369 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 IGHV5-10-1A0A0J9YXX1 117 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 A0A1B0GWA3 101 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 EFCAB7A8K855 629 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 C9orf172C9J069 976 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 NPIPA7E9PJI5 369 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 NPIPB9F8W1W9 429 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 GABRPO00591 440 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 CASKO14936 926 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 ZNF749O43361 778 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 DYRK3O43781 588 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 PRAMEF2O60811 474 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 SLC2A10O95528 541 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 CLEC2LP0C7M8 214 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 NPIPA8P0DM63 369 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 IL7P13232 177 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 ZNF3P17036 446 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 HK1P19367 917 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 CD79BP40259 229 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 TMED10P49755 219 aaKnown RBP13.58□□□□□ -0.24
USP4-203ENST00000415188 EMDP50402 254 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 PLAURQ03405 335 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 CFHR1Q03591 330 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 STX4Q12846 297 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 GALEQ14376 348 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 FGFBP1Q14512 234 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms