RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 KLRB1Q12918 225 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 TMEM176BQ3YBM2 270 aaPredicted RBP16.31■□□□□ 0.2
SDC1-203ENST00000403076 ATG16L2Q8NAA4 619 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 OR9Q2Q8NGE9 314 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 PFN4Q8NHR9 129 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 STK35Q8TDR2 534 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 SLC25A43Q8WUT9 341 aaPredicted RBP16.31■□□□□ 0.2
SDC1-203ENST00000403076 DNAJA3Q96EY1 480 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 ZNF426Q9BUY5 554 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 SLC19A3Q9BZV2 496 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 ZDHHC11Q9H8X9 412 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 KIF17Q9P2E2 1029 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 NPIPA1Q9UND3 350 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 NCKAP5O14513 1909 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 IGKV1D-42A0A075B6H8 117 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 TRGV5A0A0B4J1U4 118 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 AHSA1O95433 338 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 POU3F2P20265 443 aaPredicted RBP16.3■□□□□ 0.2
SDC1-203ENST00000403076 CHMP24386 653 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 FKBP2P26885 142 aaKnown RBP16.3■□□□□ 0.2
SDC1-203ENST00000403076 PEX2P28328 305 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 RAC1P63000 192 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 SNCBQ16143 134 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 SYT14P1Q58G82 188 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 CMPK2Q5EBM0 449 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 C1orf140Q5VVS0 124 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 C5orf46Q6UWT4 87 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 PRICKLE2Q7Z3G6 844 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 AQP11Q8NBQ7 271 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 ZNF556Q9HAH1 456 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 TMEM5Q9Y2B1 443 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 PIEZO2Q9H5I5 2752 aa16.3■□□□□ 0.2
SDC1-203ENST00000403076 TRAV36DV7A0A075B6V5 113 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 ZC3H12DA2A288 527 aaKnown RBP16.29■□□□□ 0.2
SDC1-203ENST00000403076 ENO4A6NNW6 628 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 CASQ2O14958 399 aaPredicted RBP16.29■□□□□ 0.2
SDC1-203ENST00000403076 ANXA8P13928 327 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 RPS5P46782 204 aaKnown RBP16.29■□□□□ 0.2
SDC1-203ENST00000403076 STARP49675 285 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 IL1RL1Q01638 556 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 EGR4Q05215 589 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 PRKCDQ05655 676 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 MEX3DQ86XN8 651 aaKnown RBP16.29■□□□□ 0.2
SDC1-203ENST00000403076 EPHX4Q8IUS5 362 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 CBR4Q8N4T8 237 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 CISD2Q8N5K1 135 aaKnown RBP16.29■□□□□ 0.2
SDC1-203ENST00000403076 NEIL3Q8TAT5 605 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 GTPBP3Q969Y2 492 aaKnown RBP16.29■□□□□ 0.2
SDC1-203ENST00000403076 BPIFA2Q96DR5 249 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 KTI12Q96EK9 354 aaPredicted RBP16.29■□□□□ 0.2
SDC1-203ENST00000403076 SGTBQ96EQ0 304 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 FAM46AQ96IP4 442 aaKnown RBP16.29■□□□□ 0.2
SDC1-203ENST00000403076 OR5B2Q96R09 309 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 FEVQ99581 238 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 COQ10BQ9H8M1 238 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 MEPEQ9NQ76 525 aaPredicted RBP16.29■□□□□ 0.2
SDC1-203ENST00000403076 MGAT4BQ9UQ53 548 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 LIPGQ9Y5X9 500 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 ARRDC5A6NEK1 342 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 GJE1A6NN92 205 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 CH25HO95992 272 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 GASTP01350 101 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 POU2F1P14859 743 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 GPR4P46093 362 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 CLK1P49759 484 aaKnown RBP16.29■□□□□ 0.2
SDC1-203ENST00000403076 GFRA1P56159 465 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 C1QL3Q5VWW1 255 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 PGBD2Q6P3X8 592 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 ZER1Q7Z7L7 766 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 UBQLNLQ8IYU4 475 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 GALNT4Q8N4A0 578 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 Q8NA96 180 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 GNPDA2Q8TDQ7 276 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 ABTB1Q969K4 478 aaPredicted RBP16.29■□□□□ 0.2
SDC1-203ENST00000403076 SLC25A36Q96CQ1 311 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 ARL5BQ96KC2 179 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 POTEKPQ9BYX7 375 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 VCX3BQ9H321 246 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 SMURF2Q9HAU4 748 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 C20orf141Q9NUB4 165 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 AP4B1Q9Y6B7 739 aa16.29■□□□□ 0.2
SDC1-203ENST00000403076 EFCAB9A8MZ26 197 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 EI24O14681 340 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 SEC14L5O43304 696 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 OR2T1O43869 369 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 HCN1O60741 890 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 ACTL6AO96019 429 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 SAGP10523 405 aaPredicted RBP16.28■□□□□ 0.2
SDC1-203ENST00000403076 SHC1P29353 583 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 IDUAP35475 653 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 PTDSS1P48651 473 aaKnown RBP16.28■□□□□ 0.2
SDC1-203ENST00000403076 OGFRL1Q5TC84 451 aaPredicted RBP16.28■□□□□ 0.2
SDC1-203ENST00000403076 ZNF770Q6IQ21 691 aaPredicted RBP16.28■□□□□ 0.2
SDC1-203ENST00000403076 TRILQ7L0X0 811 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 MAGEE2Q8TD90 523 aaPredicted RBP16.28■□□□□ 0.2
SDC1-203ENST00000403076 NRG4Q8WWG1 115 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 TAAR8Q969N4 342 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 KLHL15Q96M94 604 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 SLC29A1Q99808 456 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 RBM4BQ9BQ04 359 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms