RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FAM131CQ96AQ9 280 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ECHDC3Q96DC8 303 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 NUS1Q96E22 293 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 OPALINQ96PE5 141 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CGREF1Q99674 301 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 NAPGQ99747 312 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 MED10Q9BTT4 135 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 LRRC1Q9BTT6 524 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TRIM4Q9C037 500 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 COMMD4Q9H0A8 199 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 SHARPINQ9H0F6 387 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 RACGAP1Q9H0H5 632 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 PELI2Q9HAT8 420 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 C12orf10Q9HB07 376 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 PRSS16Q9NQE7 514 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 OR2S2Q9NQN1 319 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 SDR39U1Q9NRG7 319 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 GPATCH2LQ9NWQ4 482 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 PSMD13Q9UNM6 376 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 OR2W1Q9Y3N9 320 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 SAMHD1Q9Y3Z3 626 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 BCORL1Q5H9F3 1711 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 YEATS2Q9ULM3 1422 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 NCOA3Q9Y6Q9 1424 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 PDS5AQ29RF7 1337 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 IGHV4-28A0A0C4DH34 117 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 A0A1B0GUS0 222 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 A0A1B0GW15 77 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ANHXE9PGG2 379 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF195O14628 629 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TOR1AO14656 332 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 FCN3O75636 299 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 RPP14O95059 124 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 NSA2O95478 260 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 IFNA2P01563 188 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 KRT7P08729 469 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 HOXC6P09630 235 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CALM1P0DP23 149 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CALM2P0DP24 149 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CALM3P0DP25 149 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CTRB1P17538 263 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 BCKDHBP21953 392 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 GABRR2P28476 465 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 QARSP47897 775 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 MRPL19P49406 292 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 RASSF2P50749 326 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 GAS1P54826 345 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TMEM50BP56557 158 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 NANOS2P60321 138 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ZP1P60852 638 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 PRPS1P60891 318 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ITPK1Q13572 414 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CAPRIN1Q14444 709 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 KLHL38Q2WGJ6 581 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 C1orf220Q5T0J3 134 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 C9orf135Q5VTT2 229 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 MFSD14CQ5VZR4 134 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TIGD3Q6B0B8 471 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CTRB2Q6GPI1 263 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TYW3Q6IPR3 259 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 FAM171BQ6P995 826 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TTC33Q6PID6 262 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 HACD2Q6Y1H2 254 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CCNI2Q6ZMN8 369 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF771Q7L3S4 317 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 PAGE2Q7Z2X7 111 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 PIWIL4Q7Z3Z4 852 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 APRG1Q8IVJ8 170 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 SLC35F2Q8IXU6 374 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 RNF113BQ8IZP6 322 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 MARVELD2Q8N4S9 558 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 DHRSXQ8N5I4 330 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CCDC185Q8N715 623 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 OR7A2PQ8NGA2 310 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TMEM174Q8WUU8 243 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 GTF2H4Q92759 462 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CAPNS2Q96L46 248 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 C3orf30Q96M34 536 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 JSRP1Q96MG2 331 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CSPG4P5Q96PW8 444 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CTRCQ99895 268 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 FEM1AQ9BSK4 669 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TMEM121Q9BTD3 319 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 APOOQ9BUR5 198 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 MAP1LC3CQ9BXW4 147 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 PARD6GQ9BYG4 376 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 SLITRK2Q9H156 845 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 CPVLQ9H3G5 476 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 METTL8Q9H825 291 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 DUS2Q9NX74 493 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 TAS2R7Q9NYW3 318 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ASIC3Q9UHC3 531 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 MRM2Q9UI43 246 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 NAGKQ9UJ70 344 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 EIF3LQ9Y262 564 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 AK6Q9Y3D8 172 aaKnown RBP3.56□□□□□ -1.84
HMGB1-204ENST00000399489 MMP24Q9Y5R2 645 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 ALG6Q9Y672 507 aa3.56□□□□□ -1.84
HMGB1-204ENST00000399489 FHOD3Q2V2M9 1422 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms