RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PFN4Q8NHR9 129 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 NANPQ8TBE9 248 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 KIAA1143Q96AT1 154 aaPredicted RBP8.9□□□□□ -0.98
COL6A3-204ENST00000392003 RNF170Q96K19 258 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 MNTQ99583 582 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 TBX5Q99593 518 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 PRSS27Q9BQR3 290 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 TRIM2Q9C040 744 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 TTYH1Q9H313 450 aaPredicted RBP8.9□□□□□ -0.98
COL6A3-204ENST00000392003 FBXO34Q9NWN3 711 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 KLF2Q9Y5W3 355 aaPredicted RBP8.9□□□□□ -0.98
COL6A3-204ENST00000392003 ATG2AQ2TAZ0 1938 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 GXYLT2A0PJZ3 443 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 ZNF217O75362 1048 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 MAKP20794 623 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 MAOBP27338 520 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 HTR2AP28223 471 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 CD79BP40259 229 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 GABREP78334 506 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 ALKBH1Q13686 389 aaKnown RBP8.9□□□□□ -0.98
COL6A3-204ENST00000392003 BAK1Q16611 211 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 LCN1P1Q5VSP4 162 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 TMEM52Q8NDY8 209 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 IL17RDQ8NFM7 739 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 ENKURQ8TC29 256 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 ST8SIA4Q92187 359 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 AHCYL2Q96HN2 611 aaKnown RBP8.9□□□□□ -0.98
COL6A3-204ENST00000392003 C1QTNF6Q9BXI9 259 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 TRIM36Q9NQ86 728 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.9□□□□□ -0.98
COL6A3-204ENST00000392003 TMEM74BQ9NUR3 256 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 TBC1D24Q9ULP9 559 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 BAIAP2Q9UQB8 552 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 A0A1B0GV90 55 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 A0A1W2PRG6 482 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 CD8B2A6NJW9 211 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 FAM25AB3EWG3 89 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 FAM25CB3EWG5 89 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 FAM25GB3EWG6 89 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 TFECO14948 347 aaPredicted RBP8.9□□□□□ -0.99
COL6A3-204ENST00000392003 IFI6P09912 130 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 RD3LP0DJH9 198 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 CD8BP10966 210 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 RNH1P13489 461 aaKnown RBP8.9□□□□□ -0.99
COL6A3-204ENST00000392003 TMEM11P17152 192 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 CCR5P51681 352 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 CAPZA1P52907 286 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 CAV3P56539 151 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 UBE2IP63279 158 aaKnown RBP8.9□□□□□ -0.99
COL6A3-204ENST00000392003 ACSM1Q08AH1 577 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 ZNF79Q15937 498 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 DEFB110Q30KQ9 67 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 PRPF38BQ5VTL8 546 aaKnown RBP8.9□□□□□ -0.99
COL6A3-204ENST00000392003 NIPAL3Q6P499 406 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 LRFN4Q6PJG9 635 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 CD200R1LQ6Q8B3 271 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 ABI3BPQ7Z7G0 1075 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 OR13C2Q8NGS9 318 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 OR9A4Q8NGU2 314 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 OR51A7Q8NH64 312 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 LMX1AQ8TE12 382 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 ZDHHC1Q8WTX9 485 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 ALG8Q9BVK2 526 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 MIXL1Q9H2W2 232 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 SEMA6CQ9H3T2 930 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 MED20Q9H944 212 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 BABAM2Q9NXR7 383 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 NPAP1Q9NZP6 1156 aa8.9□□□□□ -0.99
COL6A3-204ENST00000392003 ZNF223Q9UK11 482 aaPredicted RBP8.9□□□□□ -0.99
COL6A3-204ENST00000392003 ARHGEF17Q96PE2 2063 aaPredicted RBP8.89□□□□□ -0.99
COL6A3-204ENST00000392003 TMEM238LA0A1B0GVL6 79 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 CLDN4O14493 209 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 GMDSO60547 372 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 RGS9O75916 674 aaPredicted RBP8.89□□□□□ -0.99
COL6A3-204ENST00000392003 NKX2-2O95096 273 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 MT-ND5P03915 603 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SLC6A6P31641 620 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 MZT2BQ6NZ67 158 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 B3GLCTQ6Y288 498 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 TMPRSS11FQ6ZWK6 438 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 OAFQ86UD1 273 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 PARGQ86W56 976 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SLC38A3Q99624 504 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 GAL3ST1Q99999 423 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 NDC1Q9BTX1 674 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 RBCK1Q9BYM8 510 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 IL21RQ9HBE5 538 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 INPP5EQ9NRR6 644 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 WSB2Q9NYS7 404 aaPredicted RBP8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SLC9B1P1A6NJY1 282 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 LRRTM2O43300 516 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 LALBAP00709 142 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 IGHV4-34P06331 123 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 CT62P0C5K7 136 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 FUT1P19526 365 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 BDH1Q02338 343 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 MADCAM1Q13477 382 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 GPR50Q13585 617 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 IL18Q14116 193 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 AARDQ4LEZ3 155 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms