RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 ZNF433Q8N7K0 673 aaPredicted RBP12.08□□□□□ -0.48
TNFRSF1A-202ENST00000366159 AURKBQ96GD4 344 aaPredicted RBP12.08□□□□□ -0.48
TNFRSF1A-202ENST00000366159 COX4I2Q96KJ9 171 aa12.08□□□□□ -0.48
TNFRSF1A-202ENST00000366159 RSPO3Q9BXY4 272 aaPredicted RBP12.08□□□□□ -0.48
TNFRSF1A-202ENST00000366159 PAIP1Q9H074 479 aaKnown RBP12.08□□□□□ -0.48
TNFRSF1A-202ENST00000366159 SLC52A3Q9NQ40 469 aa12.08□□□□□ -0.48
TNFRSF1A-202ENST00000366159 RLIMQ9NVW2 624 aa12.08□□□□□ -0.48
TNFRSF1A-202ENST00000366159 TMEM181Q9P2C4 612 aa12.08□□□□□ -0.48
TNFRSF1A-202ENST00000366159 P2RX2Q9UBL9 471 aa12.08□□□□□ -0.48
TNFRSF1A-202ENST00000366159 ZC3H12DA2A288 527 aaKnown RBP12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 FAM234BA2RU67 622 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 CFAP73A6NFT4 308 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 OVOL3O00110 214 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 PDLIM1O00151 329 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 TGDSO95455 350 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 BMP2P12643 396 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 GNA13Q14344 377 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 CAPRIN1Q14444 709 aaKnown RBP12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 TIMM23BQ5SRD1 257 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 FBXW9Q5XUX1 488 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 ZNF836Q6ZNA1 936 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 YTHDF3Q7Z739 585 aaKnown RBP12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 P2RY8Q86VZ1 359 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 VRK2Q86Y07 508 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 FUNDC1Q8IVP5 155 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 PEX5LQ8IYB4 626 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 ZNF440Q8IYI8 595 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 MIER2Q8N344 545 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 OR52P1PQ8NH57 321 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 PIGXQ8TBF5 258 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 AKAP1Q92667 903 aaKnown RBP eCLIP12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 DNAJA3Q96EY1 480 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 PERPQ96FX8 193 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 ITCHQ96J02 903 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 RMND5AQ9H871 391 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 CALML5Q9NZT1 146 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 EMC3Q9P0I2 261 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 MALT1Q9UDY8 824 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 RNF115Q9Y4L5 304 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 PCDHB14Q9Y5E9 798 aa12.07□□□□□ -0.48
TNFRSF1A-202ENST00000366159 A0A0G2JPF8 293 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 HNRNPCL2B2RXH8 293 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 HNRNPCL3B7ZW38 293 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 GPR171O14626 319 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 EIF1BO60739 113 aaKnown RBP12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 HNRNPCL1O60812 293 aaKnown RBP12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 BCHEP06276 602 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 CD3EP07766 207 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 THBS1P07996 1170 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 HNRNPCL4P0DMR1 293 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 CCNA2P20248 432 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 CRATP43155 626 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 CRISP3P54108 245 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 DSTNP60981 165 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 SLC35A1P78382 337 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 BSPH1Q075Z2 132 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 SLC17A1Q14916 467 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 RGNQ15493 299 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 ZNF672Q499Z4 452 aaPredicted RBP12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 LIN52Q52LA3 116 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 RNF220Q5VTB9 566 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 CLIP4Q8N3C7 705 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 NEUROG1Q92886 237 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 DDIT4LQ96D03 193 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 ZHX1-C8orf76Q96EF9 292 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 TMEM19Q96HH6 336 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 Q96MF0 132 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 EBF4Q9BQW3 602 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 TRIM2Q9C040 744 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 ESRP2Q9H6T0 727 aaKnown RBP12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 BCL2L10Q9HD36 194 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 SLCO1B3Q9NPD5 702 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 NGBQ9NPG2 151 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 THUMPD1Q9NXG2 353 aaKnown RBP12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 NPAP1Q9NZP6 1156 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 NOSIPQ9Y314 301 aaKnown RBP12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 FLVCR1Q9Y5Y0 555 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 GMEB1Q9Y692 573 aa12.06□□□□□ -0.48
TNFRSF1A-202ENST00000366159 NAV3Q8IVL0 2385 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 OR5H1A6NKK0 313 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 NPIPB7O75200 414 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 ANP32DO95626 131 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 SOD3P08294 240 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 NUDT7P0C024 238 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 GKN3PP0CG01 181 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 GGT1P19440 569 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 IDH3AP50213 366 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 P2RY4P51582 365 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 FOXG1P55316 489 aaPredicted RBP12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 OR2B6P58173 313 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 PPA1Q15181 289 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 ZSWIM7Q19AV6 140 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 LRIF1Q5T3J3 769 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 PRAMEF8Q5VWM4 474 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 PRAMEF7Q5VXH5 474 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 SLC2A7Q6PXP3 512 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 BLOC1S3Q6QNY0 202 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 PAQR6Q6TCH4 344 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 SSX8Q7RTT4 187 aa12.05□□□□□ -0.48
TNFRSF1A-202ENST00000366159 MSRB3Q8IXL7 192 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms