RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ZNF716A6NP11 495 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 ZNF208O43345 1280 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 EDF1O60869 148 aaKnown RBP16.29■□□□□ 0.2
CLN3-202ENST00000355477 THBS1P07996 1170 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 IMPDH2P12268 514 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 NCF2P19878 526 aaPredicted RBP16.29■□□□□ 0.2
CLN3-202ENST00000355477 OR2B6P58173 313 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 LARS2Q15031 903 aaKnown RBP16.29■□□□□ 0.2
CLN3-202ENST00000355477 DEFB113Q30KQ7 82 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 WFDC8Q8IUA0 241 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 STON2Q8WXE9 905 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 SPATA9Q9BWV2 254 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 HDHD5Q9BXW7 423 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 OR10A4Q9H209 315 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 ZNF385DQ9H6B1 395 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 TMEM45AQ9NWC5 275 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 ZNF446Q9NWS9 450 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 TMEM181Q9P2C4 612 aa16.29■□□□□ 0.2
CLN3-202ENST00000355477 IGKV3D-15A0A087WSY6 115 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.28■□□□□ 0.2
CLN3-202ENST00000355477 A0A1W2PP18 115 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 DNPH1O43598 174 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 PGM3O95394 542 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 UQCRBP14927 111 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 IRX1P78414 480 aaPredicted RBP16.28■□□□□ 0.2
CLN3-202ENST00000355477 H3F3AP84243 136 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 PDK3Q15120 406 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 ZNF311Q5JNZ3 666 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 PRAMEF8Q5VWM4 474 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 PRAMEF7Q5VXH5 474 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 DLEU7Q6UYE1 221 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 Q6ZT83 130 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 GALNT5Q7Z7M9 940 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 SERPINA11Q86U17 422 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 CADM2Q8N3J6 435 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 STEAP2Q8NFT2 490 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 NFKBIDQ8NI38 313 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 DDIT4LQ96D03 193 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 IFT52Q9Y366 437 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 GMEB1Q9Y692 573 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 NF1P21359 2839 aa16.28■□□□□ 0.2
CLN3-202ENST00000355477 ZFHX3Q15911 3703 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 FRS3O43559 492 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 PLAUP00749 431 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 FPR1P21462 350 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 HOXC5Q00444 222 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 BNIP2Q12982 314 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 ITGADQ13349 1161 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 P2RY6Q15077 328 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 ZSWIM7Q19AV6 140 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 BEX5Q5H9J7 111 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 WBP2NLQ6ICG8 309 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 ALKBH2Q6NS38 261 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 KISS1RQ969F8 398 aaPredicted RBP16.27■□□□□ 0.2
CLN3-202ENST00000355477 ZHX1-C8orf76Q96EF9 292 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 PLPPR2Q96GM1 343 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 UBTD1Q9HAC8 227 aa16.27■□□□□ 0.2
CLN3-202ENST00000355477 C2CD3Q4AC94 2353 aa16.27■□□□□ 0.19
CLN3-202ENST00000355477 NIPBLQ6KC79 2804 aaeCLIP16.26■□□□□ 0.19
CLN3-202ENST00000355477 C5orf58C9J3I9 102 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 LYZL6O75951 148 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 IGHV3-9P01782 118 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 ARAFP10398 606 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 GPX2P18283 190 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 PPIBP23284 216 aaKnown RBP16.26■□□□□ 0.19
CLN3-202ENST00000355477 IL32P24001 234 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 CXCR1P25024 350 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 MAP2K6P52564 334 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 SLC16A1P53985 500 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 COPZ1P61923 177 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 SLC35A1P78382 337 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 TAB1Q15750 504 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 ADRM1Q16186 407 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 ACKR1Q16570 336 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 GCNT6Q5T4J0 391 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 BHLHA15Q7RTS1 189 aaPredicted RBP16.26■□□□□ 0.19
CLN3-202ENST00000355477 COMTD1Q86VU5 262 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 TGIF2LYQ8IUE0 185 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 ZNF100Q8IYN0 542 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 BBS10Q8TAM1 723 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 PIGXQ8TBF5 258 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 TMUB1Q9BVT8 246 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 POTEKPQ9BYX7 375 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 RABEP2Q9H5N1 569 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 EMC3Q9P0I2 261 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.26■□□□□ 0.19
CLN3-202ENST00000355477 PRDM4Q9UKN5 801 aa16.26■□□□□ 0.19
CLN3-202ENST00000355477 NOSIPQ9Y314 301 aaKnown RBP16.26■□□□□ 0.19
CLN3-202ENST00000355477 HEATR1Q9H583 2144 aaKnown RBP16.25■□□□□ 0.19
CLN3-202ENST00000355477 USF3Q68DE3 2245 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 A0A0G2JND7 137 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 ETS2P15036 469 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 IGHV1-2P23083 117 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 ADAM8P78325 824 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 CDK6Q00534 326 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 CEACAM7Q14002 265 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 RUNDC3AQ59EK9 446 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 REEP3Q6NUK4 255 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 RETREG3Q86VR2 466 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 HSD17B8Q92506 261 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms