RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 AQP4P55087 323 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 MED21Q13503 144 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 EPHX4Q8IUS5 362 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 CCDC103Q8IW40 242 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 TMEM178AQ8NBL3 297 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 C7orf57Q8NEG2 295 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 OR13C2Q8NGS9 318 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 C9orf43Q8TAL5 461 aaPredicted RBP8.34□□□□□ -1.07
USP4-202ENST00000351842 C3orf49Q96BT1 292 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 CENPNQ96H22 339 aaPredicted RBP8.34□□□□□ -1.07
USP4-202ENST00000351842 PRRC1Q96M27 445 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 ZNF696Q9H7X3 374 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 ZFP64Q9NPA5 681 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 AGPAT4Q9NRZ5 378 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 ZNF337Q9Y3M9 751 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 COMMD3-BMI1R4GMX3 469 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 NOTCH2Q04721 2471 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 TMED7-TICAM2A0A0A6YYA0 188 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 OR2M5A3KFT3 312 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 KLRC4-KLRK1H3BQV0 150 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 ADAMDEC1O15204 470 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 SNAP29O95721 258 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 GASTP01350 101 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 CDH2P19022 906 aaPredicted RBP8.34□□□□□ -1.07
USP4-202ENST00000351842 ELAVL4P26378 380 aaKnown RBP8.34□□□□□ -1.07
USP4-202ENST00000351842 GTF2E2P29084 291 aaKnown RBP8.34□□□□□ -1.07
USP4-202ENST00000351842 RPL4P36578 427 aaKnown RBP8.34□□□□□ -1.07
USP4-202ENST00000351842 SH3BGRP55822 239 aaPredicted RBP8.34□□□□□ -1.07
USP4-202ENST00000351842 EPS8Q12929 822 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 EXOSC6Q5RKV6 272 aaKnown RBP8.34□□□□□ -1.07
USP4-202ENST00000351842 PRICKLE2Q7Z3G6 844 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 FAM83FQ8NEG4 500 aaPredicted RBP8.34□□□□□ -1.07
USP4-202ENST00000351842 OR2M3Q8NG83 312 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 TMEM239Q8WW34 195 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 FOXN4Q96NZ1 517 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 EGLN3Q9H6Z9 239 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 ZNF556Q9HAH1 456 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 TMED7Q9Y3B3 224 aa8.34□□□□□ -1.07
USP4-202ENST00000351842 TRAV17A0A0B4J275 112 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 TNFSF11O14788 317 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 CCNB2O95067 398 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 FPR1P21462 350 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 RPP38P78345 283 aaKnown RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 CNPY1Q3B7I2 92 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 C6orf52Q5T4I8 152 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 DHRS4L2Q6PKH6 230 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 METTL25Q8N6Q8 603 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 GIPC3Q8TF64 312 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 TM9SF4Q92544 642 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 MOGAT1Q96PD6 335 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 TAAR6Q96RI8 345 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 GPA33Q99795 319 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 FAM173AQ9BQD7 235 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 TRIM2Q9C040 744 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 RASSF1Q9NS23 344 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 KRT84Q9NSB2 600 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 B3GNT3Q9Y2A9 372 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 KLF13Q9Y2Y9 288 aaPredicted RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 LRRC3CA6NJW4 275 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 AKR7A3O95154 331 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 RASAL1O95294 804 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 IGHV3-9P01782 118 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 CYC1P08574 325 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 PRKCAP17252 672 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 RPS4Y1P22090 263 aaKnown RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 SLC1A3P43003 542 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 CHN2P52757 468 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 SLC16A1P53985 500 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 DYNC1I2Q13409 638 aaKnown RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 LSAMPQ13449 338 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 APOFQ13790 326 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 TRAM2Q15035 370 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 ATP6AP1Q15904 470 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 FXNQ16595 210 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 SLC36A3Q495N2 470 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 WBP2NLQ6ICG8 309 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 ULK3Q6PHR2 472 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 HOXB13Q92826 284 aaPredicted RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 SLC35B4Q969S0 331 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 ZNF845Q96IR2 970 aaPredicted RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 ARHGDIGQ99819 225 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 RBM38Q9H0Z9 239 aaKnown RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 MAN2C1Q9NTJ4 1040 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 CAMK2AQ9UQM7 478 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 CRYBG3Q68DQ2 2970 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 USP9XQ93008 2570 aaPredicted RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 CDC42EP2O14613 210 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 PRSS23O95084 383 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 POU3F2P20265 443 aaPredicted RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 CNR1P21554 472 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 NOS3P29474 1203 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 HSPA13P48723 471 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 ZNF169Q14929 603 aaPredicted RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 PDK3Q15120 406 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 H3F3CQ6NXT2 135 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 TTC33Q6PID6 262 aaPredicted RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 RBMXL3Q8N7X1 1067 aaKnown RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 HTRA1Q92743 480 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 HAS2Q92819 552 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 C1GALT1C1Q96EU7 318 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms