RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 PSMB5P28074 263 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 RFC3P40938 356 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 AKR1C2P52895 323 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 FOXK2Q01167 660 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 AKR1C1Q04828 323 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 CRMP1Q14194 572 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 SMAD2Q15796 467 aaKnown RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 MICBQ29980 383 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 PWWP2BQ6NUJ5 590 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 TSSK4Q6SA08 328 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 GDPD4Q6W3E5 623 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 ZNF793Q6ZN11 406 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 TMEM17Q86X19 198 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 NUDT13Q86X67 352 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 CMTM8Q8IZV2 173 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 EID2Q8N6I1 236 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 TMEM185AQ8NFB2 350 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 NLGN2Q8NFZ4 835 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 C2CD4CQ8TF44 421 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 TCEAL4Q96EI5 215 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 ZNF75AQ96N20 296 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 CASD1Q96PB1 797 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 OR7D2Q96RA2 312 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 FAM117AQ9C073 453 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 ZNF334Q9HCZ1 680 aaPredicted RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 NOX4Q9NPH5 578 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 PRDM9Q9NQV7 894 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 BIN3Q9NQY0 253 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 CMC2Q9NRP2 79 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 SIDT1Q9NXL6 827 aaKnown RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 TAC3Q9UHF0 121 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 KLF15Q9UIH9 416 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 METRNQ9UJH8 293 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 KIAA1549LQ6ZVL6 1849 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 MDC1Q14676 2089 aaKnown RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 A0A087WV48 116 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 A0A0A6YYD5 115 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 CENPVL1A0A0U1RR11 272 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 ACOD1A6NK06 481 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 DISC1C4P0D8 188 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 C4orf51C9J302 202 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 MAN2B1O00754 1011 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 ERAL1O75616 437 aaKnown RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 EIF3GO75821 320 aaKnown RBP eCLIP6.26□□□□□ -1.41
VPS39-202ENST00000348544 STATHP02808 62 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 RPLP2P05387 115 aaKnown RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 UBBP0CG47 229 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 UBCP0CG48 685 aaKnown RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 C8orf89P0DMQ9 161 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 SPP1P10451 314 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 MGMTP16455 207 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 CD96P40200 585 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 PDX1P52945 283 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 RPS27AP62979 156 aaKnown RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 UBA52P62987 128 aaKnown RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 UBE2IP63279 158 aaKnown RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 TNFRSF17Q02223 184 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 PLA2G7Q13093 441 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 KRT33BQ14525 404 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 POM121L1PQ3SYA9 428 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 MANEAQ5SRI9 462 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 TMEM69Q5SWH9 247 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 PRAMEF8Q5VWM4 474 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 PRAMEF7Q5VXH5 474 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 SLC6A19Q695T7 634 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 HAGHLQ6PII5 290 aaPredicted RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 LCTLQ6UWM7 567 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 C11orf96Q7Z7L8 435 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 CCDC116Q8IYX3 515 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 ZNF433Q8N7K0 673 aaPredicted RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 OR13C2Q8NGS9 318 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 OR2A12Q8NGT7 310 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 SYNPRQ8TBG9 265 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 SFT2D1Q8WV19 159 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 CNRIP1Q96F85 164 aaPredicted RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 C10orf90Q96M02 699 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 HS6ST2Q96MM7 605 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 TSNAXQ99598 290 aaKnown RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 ZDHHC5Q9C0B5 715 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 CHST6Q9GZX3 395 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 WSB2Q9NYS7 404 aaPredicted RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 OR5V1Q9UGF6 321 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 ZNF230Q9UIE0 474 aaPredicted RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 YIPF1Q9Y548 306 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 TRAV20A0A0B4J274 112 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 UBE2QL1A1L167 161 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 TMEM218A2RU14 115 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 OR6C68A6NDL8 312 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 ANKRD61A6NGH8 418 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 RFPL4AA6NLU0 287 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 RFPL4AL1F8VTS6 287 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 RLN1P04808 185 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 GALTP07902 379 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 TIMP2P16035 220 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 SRMP19623 302 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 PVALBP20472 110 aaPredicted RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 ACADLP28330 430 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 ZNF136P52737 540 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 TAS2R20P59543 309 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 TGM3Q08188 693 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms