RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 BICRALQ6AI39 1079 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 LYPD8Q6UX82 237 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 NUP54Q7Z3B4 507 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 OR11G2Q8NGC1 345 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 FN3KQ9H479 309 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 MED20Q9H944 212 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 DIMT1Q9UNQ2 313 aaKnown RBP12.19□□□□□ -0.46
HMGB1-202ENST00000339872 BAIAP2Q9UQB8 552 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 PCDHGA1Q9Y5H4 931 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 SDK2Q58EX2 2172 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 NSG1A0A0A6YYJ2 146 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 RIIAD1A6NNX1 92 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 MCIDASD6RGH6 385 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 GABARAPO95166 117 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 CD63P08962 238 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 RPL4P36578 427 aaKnown RBP12.19□□□□□ -0.46
HMGB1-202ENST00000339872 SH3BGRP55822 239 aaPredicted RBP12.19□□□□□ -0.46
HMGB1-202ENST00000339872 ZNF74Q16587 644 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 CTF1Q16619 201 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 SHFQ7M4L6 423 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 SLC43A2Q8N370 569 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 OR10G3Q8NGC4 313 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 GPR119Q8TDV5 335 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 TTC9Q92623 222 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 MOGAT1Q96PD6 335 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 ERMAPQ96PL5 475 aaPredicted RBP12.19□□□□□ -0.46
HMGB1-202ENST00000339872 GPN2Q9H9Y4 310 aaPredicted RBP12.19□□□□□ -0.46
HMGB1-202ENST00000339872 ZNF160Q9HCG1 818 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 NANSQ9NR45 359 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 TAS2R10Q9NYW0 307 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 FOXJ2Q9P0K8 574 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 TCFL5Q9UL49 500 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 CPAMD8Q8IZJ3 1885 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 IRGMA1A4Y4 181 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 MYL12BO14950 172 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 ITGA10O75578 1167 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 WISP1O95388 367 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 IGF2P01344 180 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 IGHEP01854 428 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 FBXO45P0C2W1 286 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 ZNF3P17036 446 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 OTX2P32243 289 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 GAS1P54826 345 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 C17orf67Q0P5P2 114 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 NFATC3Q12968 1075 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 TRIP6Q15654 476 aaKnown RBP12.18□□□□□ -0.46
HMGB1-202ENST00000339872 ARMCX4Q5H9R4 360 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 ARHGAP11AQ6P4F7 1023 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 PAQR6Q6TCH4 344 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 GID4Q8IVV7 300 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 KTI12Q96EK9 354 aaPredicted RBP12.18□□□□□ -0.46
HMGB1-202ENST00000339872 MND1Q9BWT6 205 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 MMP25Q9NPA2 562 aa12.18□□□□□ -0.46
HMGB1-202ENST00000339872 MRPS18AQ9NVS2 196 aaKnown RBP12.18□□□□□ -0.46
HMGB1-202ENST00000339872 HTR3EA5X5Y0 456 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 TRIM64BA6NI03 449 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 PRR23D1E9PI22 279 aaPredicted RBP12.17□□□□□ -0.46
HMGB1-202ENST00000339872 TNFRSF10AO00220 468 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 PRR23D2P0DMB1 279 aaPredicted RBP12.17□□□□□ -0.46
HMGB1-202ENST00000339872 PEPDP12955 493 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 MYL12AP19105 171 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 HK1P19367 917 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 HTR1FP30939 366 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 SOX3P41225 446 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 RPS5P46782 204 aaKnown RBP12.17□□□□□ -0.46
HMGB1-202ENST00000339872 POLR2HP52434 150 aaKnown RBP12.17□□□□□ -0.46
HMGB1-202ENST00000339872 LSM3P62310 102 aaKnown RBP12.17□□□□□ -0.46
HMGB1-202ENST00000339872 RPS4XP62701 263 aaKnown RBP12.17□□□□□ -0.46
HMGB1-202ENST00000339872 EIF3IQ13347 325 aaKnown RBP12.17□□□□□ -0.46
HMGB1-202ENST00000339872 AQP6Q13520 282 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 TMEM164Q5U3C3 297 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 NIPAL3Q6P499 406 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 NDUFAF7Q7L592 441 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 M1APQ8TC57 530 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 SPACA9Q96E40 222 aaPredicted RBP12.17□□□□□ -0.46
HMGB1-202ENST00000339872 DNAJA3Q96EY1 480 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 MGLLQ99685 303 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 HCAR1Q9BXC0 346 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 METTL7AQ9H8H3 244 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 ADAM18Q9Y3Q7 739 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 BLOC1S5-TXNDC5H3BN57 136 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 AHCYL1O43865 530 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 SLC25A12O75746 678 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 ETV1P50549 477 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 DBPQ10586 325 aaPredicted RBP12.17□□□□□ -0.46
HMGB1-202ENST00000339872 TCF15Q12870 199 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 DOC2BQ14184 412 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 CRMP1Q14194 572 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 SPCS2Q15005 226 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 NTRK2Q16620 822 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 GRINAQ7Z429 371 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 GALNT15Q8N3T1 639 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 CYB561A3Q8NBI2 242 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 RNF138Q8WVD3 245 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 FGF20Q9NP95 211 aaPredicted RBP12.17□□□□□ -0.46
HMGB1-202ENST00000339872 MED11Q9P086 117 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 PPP4R1LQ9P1A2 415 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 CHRNA9Q9UGM1 479 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 LSM2Q9Y333 95 aaKnown RBP12.17□□□□□ -0.46
HMGB1-202ENST00000339872 PCDHGA3Q9Y5H0 932 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms