RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 FN3KRPQ9HA64 309 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 RYDENQ9NUL5 291 aaKnown RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 SPACA6W5XKT8 324 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 A0A087WWC5 75 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 SERTM1A2A2V5 107 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 EREGO14944 169 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 NDUFB6O95139 128 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 SLC10A3P09131 477 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 NBEAP1P0C6P0 100 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 SRMP19623 302 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 FSHRP23945 695 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 GABRA4P48169 554 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 CCR5P51681 352 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 RPS13P62277 151 aaKnown RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 RBBP4Q09028 425 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 MAP2K5Q13163 448 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 SLC14A1Q13336 389 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 RFTN2Q52LD8 501 aaPredicted RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 UNC50Q53HI1 259 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 XKR7Q5GH72 579 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 MRM1Q6IN84 353 aaKnown RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 SLC39A5Q6ZMH5 540 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 TRMT1LQ7Z2T5 733 aaKnown RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF248Q8NDW4 579 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 OR10AD1Q8NGE0 317 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 ALKBH7Q9BT30 221 aaPredicted RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 MFRPQ9BY79 579 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 RNF167Q9H6Y7 350 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 ACKR4Q9NPB9 350 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 RNF19AQ9NV58 838 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 TNFSF18Q9UNG2 199 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 C19orf53Q9UNZ5 99 aaPredicted RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 PPP1R3CQ9UQK1 317 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF281Q9Y2X9 895 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 TNS2Q63HR2 1409 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 RNF222A6NCQ9 220 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 E9PQ18 207 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 GFYI3L273 518 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 FAAHO00519 579 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SBK3P0C264 359 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SLC35G4P0C7Q5 338 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 CXCR1P25024 350 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SREBF1P36956 1147 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 CLK2P49760 499 aaKnown RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 RPL7AP62424 266 aaKnown RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 FABP5Q01469 135 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 EBPQ15125 230 aaKnown RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ANKRD16Q6P6B7 361 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 C6orf120Q7Z4R8 191 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 TECPR1Q7Z6L1 1165 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SDR42E1Q8WUS8 393 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ATXN7L3BQ96GX2 97 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 FIZ1Q96SL8 496 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 GPR87Q9BY21 358 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 POTEKPQ9BYX7 375 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 FGF20Q9NP95 211 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 TRIM36Q9NQ86 728 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 H2AFY2Q9P0M6 372 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF223Q9UK11 482 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OR10H1Q9Y4A9 318 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PCDHGA5Q9Y5G8 931 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SNX10Q9Y5X0 201 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 LMO7Q8WWI1 1683 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 C9J4A7 227 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 K7EPK0 472 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 HNRNPDLO14979 420 aaKnown RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 VIPP01282 170 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 VTNP04004 478 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ERCC1P07992 297 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OR10J4P0C629 311 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 TMIGD3P0DMS9 266 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 CD46P15529 392 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 CXCL3P19876 107 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 VIPR1P32241 457 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 GRK4P32298 578 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 KDELR2P33947 212 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 RABIFP47224 123 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF84P51523 738 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PNLIPRP2P54317 469 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PCBP4P57723 403 aaKnown RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 TAS2R31P59538 309 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 LSM6P62312 80 aaKnown RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 MADCAM1Q13477 382 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PTPRCAPQ14761 206 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ARL6IP1Q15041 203 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 C1orf194Q5T5A4 169 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 FAM102AQ5T9C2 384 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 MFSD14CQ5VZR4 134 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 MEX3BQ6ZN04 569 aaKnown RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PTOV1Q86YD1 416 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 TMEM183AQ8IXX5 376 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 HIST3H2BBQ8N257 126 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 FAM71E2Q8N5Q1 922 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 RELL2Q8NC24 303 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OR51G2Q8NGK0 314 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OR5D18Q8NGL1 313 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OR2V1Q8NHB1 315 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF671Q8TAW3 534 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 MYEOVQ96EZ4 313 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ACY3Q96HD9 319 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 137.1 ms