RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 STEAP3Q658P3 488 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 OR8J2Q8NGG1 315 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 IL17FQ96PD4 163 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 HERPUD2Q9BSE4 406 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 C20orf85Q9H1P6 137 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 RNF39Q9H2S5 420 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 ZCCHC4Q9H5U6 513 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13□□□□□ -0.33
CSPG4-201ENST00000308508 METTL15A6NJ78 407 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 S100A8P05109 93 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 PGGHGQ32M88 737 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 GRASPQ7Z6J2 395 aaPredicted RBP12.99□□□□□ -0.33
CSPG4-201ENST00000308508 FAM72CH0Y354 149 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 NCR1O76036 304 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 SCG5P05408 212 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 HOXD11P31277 338 aaPredicted RBP12.99□□□□□ -0.33
CSPG4-201ENST00000308508 GDNFP39905 211 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 PLK5Q496M5 336 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 FAM72AQ5TYM5 149 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 FAM72DQ6L9T8 149 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 FAM72BQ86X60 149 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 UBR1Q8IWV7 1749 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 DMBX1Q8NFW5 382 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 KCNK13Q9HB14 408 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 KIDINS220Q9ULH0 1771 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 MROH6A6NGR9 719 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 CSNK1A1P48729 337 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 AKR1C1Q04828 323 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 NPY5RQ15761 445 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 AADACL3Q5VUY0 350 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 SLC43A2Q8N370 569 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 GGHQ92820 318 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 GSTO2Q9H4Y5 243 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 MED17Q9NVC6 651 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 GABARAPH6UMI1 98 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 GPR32O75388 356 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 GABARAPO95166 117 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 ZNF44P15621 663 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 SFTPDP35247 375 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 RBMXL3Q8N7X1 1067 aaKnown RBP12.99□□□□□ -0.33
CSPG4-201ENST00000308508 EXOSC3Q9NQT5 275 aaKnown RBP12.99□□□□□ -0.33
CSPG4-201ENST00000308508 GAB2Q9UQC2 676 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 PPP5D1E7EU14 171 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 FAM227AF5H4B4 570 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 PIRO00625 290 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 ANXA7P20073 488 aaKnown RBP12.99□□□□□ -0.33
CSPG4-201ENST00000308508 AADACP22760 399 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 EEF1A2Q05639 463 aaKnown RBP12.99□□□□□ -0.33
CSPG4-201ENST00000308508 SLC10A2Q12908 348 aaPredicted RBP12.99□□□□□ -0.33
CSPG4-201ENST00000308508 KIAA0141Q14154 515 aaPredicted RBP12.99□□□□□ -0.33
CSPG4-201ENST00000308508 IL20RBQ6UXL0 311 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 CD99L2Q8TCZ2 262 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 ARV1Q9H2C2 271 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 ISYNA1Q9NPH2 558 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 CTDSP2O14595 271 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 TRAF3IP2O43734 574 aaPredicted RBP12.99□□□□□ -0.33
CSPG4-201ENST00000308508 RETREG3Q86VR2 466 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 DMRT3Q9NQL9 472 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 OLAHQ9NV23 265 aa12.99□□□□□ -0.33
CSPG4-201ENST00000308508 H3BML4 177 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 ADAMTS4O75173 837 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 ZNF28P17035 718 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 RPS15P62841 145 aaKnown RBP12.98□□□□□ -0.33
CSPG4-201ENST00000308508 SLX4IPQ5VYV7 408 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 C12orf42Q96LP6 360 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 OR52D1Q9H346 318 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 IL2RGP31785 369 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 AHRP35869 848 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 GLYR1Q49A26 553 aaPredicted RBP12.98□□□□□ -0.33
CSPG4-201ENST00000308508 NDUFAF7Q7L592 441 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 DPF1Q92782 380 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 SMG9Q9H0W8 520 aaKnown RBP12.98□□□□□ -0.33
CSPG4-201ENST00000308508 NRIP3Q9NQ35 241 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CHRNA9Q9UGM1 479 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 STEAP1Q9UHE8 339 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 KLK4Q9Y5K2 254 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 C3P01024 1663 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CT45A6P0DMU7 189 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CT45A5P0DMU8 189 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CT45A7P0DMV0 189 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CT45A8P0DMV1 189 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CT45A9P0DMV2 189 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 SIM1P81133 766 aaPredicted RBP12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CT45A2Q5DJT8 189 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CT45A1Q5HYN5 189 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CT45A3Q8NHU0 189 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 RAB3CQ96E17 227 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 LPAR4Q99677 370 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 VAPAQ9P0L0 249 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 ZNF230Q9UIE0 474 aaPredicted RBP12.98□□□□□ -0.33
CSPG4-201ENST00000308508 Q9Y3F1 56 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 UGT2A1Q9Y4X1 527 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 TMEM269A0A1B0GVZ9 245 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 PLSCR5A0PG75 271 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 DHRS4L1P0CG22 281 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 F3P13726 295 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 INHBCP55103 352 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 SF3B4Q15427 424 aaKnown RBP eCLIP12.98□□□□□ -0.33
CSPG4-201ENST00000308508 DBX2Q6ZNG2 339 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 WDR5BQ86VZ2 330 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms