RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 GOLGA8NF8WBI6 632 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 PMS2P2O95744 297 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 GSNP06396 782 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 HEXAP06865 529 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 FESP07332 822 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 CD3EP07766 207 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 CHRM4P08173 479 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 TFPIP10646 304 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 NTF4P34130 210 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 IDH2P48735 452 aaKnown RBP8.6□□□□□ -1.03
VPS41-201ENST00000265745 CLK1P49759 484 aaKnown RBP8.6□□□□□ -1.03
VPS41-201ENST00000265745 SLC18A1P54219 525 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 HPCAP84074 193 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 LRRC74AQ0VAA2 488 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 CAPRIN1Q14444 709 aaKnown RBP8.6□□□□□ -1.03
VPS41-201ENST00000265745 SYPL1Q16563 259 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 ABLIM2Q6H8Q1 611 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 LRRC74BQ6ZQY2 392 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 ATG4DQ86TL0 474 aaPredicted RBP8.6□□□□□ -1.03
VPS41-201ENST00000265745 CMIPQ8IY22 773 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 ZNF100Q8IYN0 542 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 ZNF563Q8TA94 476 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 TMEM171Q8WVE6 324 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 PMM1Q92871 262 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 RHOVQ96L33 236 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 ZBTB18Q99592 522 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 POTEKPQ9BYX7 375 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 OR11A1Q9GZK7 315 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 SLC38A1Q9H2H9 487 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 ESRP2Q9H6T0 727 aaKnown RBP8.6□□□□□ -1.03
VPS41-201ENST00000265745 LAMP3Q9UQV4 416 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 TRAPPC4Q9Y296 219 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 HDGFL3Q9Y3E1 203 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 RNF115Q9Y4L5 304 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 SPIN1Q9Y657 262 aaPredicted RBP8.6□□□□□ -1.03
VPS41-201ENST00000265745 USF3Q68DE3 2245 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 ZNF716A6NP11 495 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 SLCO1B7G3V0H7 640 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 OVOL3O00110 214 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 CLOCKO15516 846 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 DNPH1O43598 174 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 SLC22A3O75751 556 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 LYZL6O75951 148 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 PGM3O95394 542 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 IL6P05231 212 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 SOD3P08294 240 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 DANCRP0C864 163 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 KITP10721 976 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 CD33P20138 364 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 COX5AP20674 150 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 RPS4Y1P22090 263 aaKnown RBP8.59□□□□□ -1.03
VPS41-201ENST00000265745 IGHV1-2P23083 117 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 MAGEA8P43361 318 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 HTR3AP46098 478 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 MVDP53602 400 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 ATP5J2P56134 94 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 H3F3AP84243 136 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 MAPK11Q15759 364 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 ZNF672Q499Z4 452 aaPredicted RBP8.59□□□□□ -1.03
VPS41-201ENST00000265745 TIMM23BQ5SRD1 257 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 FBXW9Q5XUX1 488 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.59□□□□□ -1.03
VPS41-201ENST00000265745 P2RY8Q86VZ1 359 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 CCDC103Q8IW40 242 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 GLB1L3Q8NCI6 653 aaPredicted RBP8.59□□□□□ -1.03
VPS41-201ENST00000265745 ZHX1-C8orf76Q96EF9 292 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 MAELQ96JY0 434 aaKnown RBP8.59□□□□□ -1.03
VPS41-201ENST00000265745 TRIM2Q9C040 744 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 SLC6A13Q9NSD5 602 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 EMC3Q9P0I2 261 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 TMEM181Q9P2C4 612 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 OSGIN1Q9UJX0 560 aa8.59□□□□□ -1.03
VPS41-201ENST00000265745 FN1P02751 2386 aaKnown RBP8.59□□□□□ -1.03
VPS41-201ENST00000265745 NUP214P35658 2090 aaPredicted RBP8.58□□□□□ -1.04
VPS41-201ENST00000265745 PRR14LQ5THK1 2151 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 TMED7-TICAM2A0A0A6YYA0 188 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 SLC35F4A4IF30 521 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 CFAP73A6NFT4 308 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 OR5H1A6NKK0 313 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 FAAHO00519 579 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 RFXANKO14593 260 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 AP3D1O14617 1153 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 GPR171O14626 319 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 SMAD7O15105 426 aaKnown RBP8.58□□□□□ -1.04
VPS41-201ENST00000265745 ZNF208O43345 1280 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 RAMP1O60894 148 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 KRT75O95678 551 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 IGHV3-9P01782 118 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 PF4P02776 101 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 DBIP07108 87 aaKnown RBP8.58□□□□□ -1.04
VPS41-201ENST00000265745 NR2F1P10589 423 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 IDO1P14902 403 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 IL7RP16871 459 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 GGT1P19440 569 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 CCNA2P20248 432 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 TACR3P29371 465 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 SLC1A3P43003 542 aa8.58□□□□□ -1.04
VPS41-201ENST00000265745 ANXA11P50995 505 aaKnown RBP8.58□□□□□ -1.04
VPS41-201ENST00000265745 POLR2HP52434 150 aaKnown RBP8.58□□□□□ -1.04
VPS41-201ENST00000265745 MAP2K6P52564 334 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms