RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 HOXC5Q00444 222 aa20.39■□□□□ 0.85
LSM4-201ENST00000252816 TESK1Q15569 626 aa20.39■□□□□ 0.85
LSM4-201ENST00000252816 WBP2NLQ6ICG8 309 aa20.39■□□□□ 0.85
LSM4-201ENST00000252816 REEP3Q6NUK4 255 aa20.39■□□□□ 0.85
LSM4-201ENST00000252816 GABRG1Q8N1C3 465 aa20.39■□□□□ 0.85
LSM4-201ENST00000252816 ZC3HAV1LQ96H79 300 aaKnown RBP20.39■□□□□ 0.85
LSM4-201ENST00000252816 ANKRD27Q96NW4 1050 aa20.39■□□□□ 0.85
LSM4-201ENST00000252816 TACO1Q9BSH4 297 aaKnown RBP20.39■□□□□ 0.85
LSM4-201ENST00000252816 CCDC134Q9H6E4 229 aa20.39■□□□□ 0.85
LSM4-201ENST00000252816 ARMC7Q9H6L4 198 aa20.39■□□□□ 0.85
LSM4-201ENST00000252816 PLEKHF2Q9H8W4 249 aa20.39■□□□□ 0.85
LSM4-201ENST00000252816 TMEM181Q9P2C4 612 aa20.39■□□□□ 0.85
LSM4-201ENST00000252816 TRAPPC4Q9Y296 219 aa20.39■□□□□ 0.85
LSM4-201ENST00000252816 ZNF724A8MTY0 619 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 FBP2O00757 339 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 RAMP1O60894 148 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 GCM2O75603 506 aaPredicted RBP20.38■□□□□ 0.85
LSM4-201ENST00000252816 THBDP07204 575 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 CRYGSP22914 178 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 MTPNP58546 118 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 SCARB2Q14108 478 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 CCDC103Q8IW40 242 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 DDIT4LQ96D03 193 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 ZNF226Q9NYT6 803 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 ST6GALNAC2Q9UJ37 374 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 PRDM4Q9UKN5 801 aa20.38■□□□□ 0.85
LSM4-201ENST00000252816 IGKV3D-15A0A087WSY6 115 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 ZNF716A6NP11 495 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 DNPH1O43598 174 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 TPST1O60507 370 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 PSMB1P20618 241 aaKnown RBP20.37■□□□□ 0.85
LSM4-201ENST00000252816 SLC6A2P23975 617 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 CXCR1P25024 350 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 PRKAR1BP31321 381 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 MAP2K6P52564 334 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 IST1P53990 364 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 COPZ1P61923 177 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 H3F3AP84243 136 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 BNIP2Q12982 314 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 NFYCQ13952 458 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 CXorf67Q86X51 503 aaPredicted RBP20.37■□□□□ 0.85
LSM4-201ENST00000252816 PTOV1Q86YD1 416 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 ZHX1-C8orf76Q96EF9 292 aa20.37■□□□□ 0.85
LSM4-201ENST00000252816 FPR1P21462 350 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 AQP1P29972 269 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 MDH1P40925 334 aaKnown RBP20.36■□□□□ 0.85
LSM4-201ENST00000252816 OR3A2P47893 321 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 CAPRIN1Q14444 709 aaKnown RBP20.36■□□□□ 0.85
LSM4-201ENST00000252816 PDK3Q15120 406 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 TSC22D1Q15714 1073 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 GLIPR1L2Q4G1C9 344 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 DHRS4L2Q6PKH6 230 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 ZC3HAV1Q7Z2W4 902 aaKnown RBP20.36■□□□□ 0.85
LSM4-201ENST00000252816 KRT73Q86Y46 540 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 SLC35B4Q969S0 331 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 C3orf49Q96BT1 292 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 ACTR6Q9GZN1 396 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 FANCFQ9NPI8 374 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 SAR1AQ9NR31 198 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 PRSS50Q9UI38 385 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 PLEKHA6Q9Y2H5 1048 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 GPR52Q9Y2T5 361 aa20.36■□□□□ 0.85
LSM4-201ENST00000252816 PRR14LQ5THK1 2151 aa20.35■□□□□ 0.85
LSM4-201ENST00000252816 NTF4P34130 210 aa20.35■□□□□ 0.85
LSM4-201ENST00000252816 SLC35A1P78382 337 aa20.35■□□□□ 0.85
LSM4-201ENST00000252816 KLF10Q13118 480 aa20.35■□□□□ 0.85
LSM4-201ENST00000252816 GALNT5Q7Z7M9 940 aa20.35■□□□□ 0.85
LSM4-201ENST00000252816 HIPK4Q8NE63 616 aa20.35■□□□□ 0.85
LSM4-201ENST00000252816 PIGXQ8TBF5 258 aa20.35■□□□□ 0.85
LSM4-201ENST00000252816 ZNF317Q96PQ6 595 aaPredicted RBP20.35■□□□□ 0.85
LSM4-201ENST00000252816 POTEKPQ9BYX7 375 aa20.35■□□□□ 0.85
LSM4-201ENST00000252816 CCM2LQ9NUG4 571 aaPredicted RBP20.35■□□□□ 0.85
LSM4-201ENST00000252816 ADAP00813 363 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 PPP3CBP16298 524 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 LOXP28300 417 aaPredicted RBP20.34■□□□□ 0.85
LSM4-201ENST00000252816 SLC16A1P53985 500 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 CYP51A1Q16850 503 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 SFRP5Q5T4F7 317 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 PAMR1Q6UXH9 720 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 ATG4DQ86TL0 474 aaPredicted RBP20.34■□□□□ 0.85
LSM4-201ENST00000252816 C11orf65Q8NCR3 313 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 NINJ1Q92982 152 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 PIK3IP1Q96FE7 263 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 SPATA5L1Q9BVQ7 753 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 KAT8Q9H7Z6 458 aaKnown RBP20.34■□□□□ 0.85
LSM4-201ENST00000252816 EMC3Q9P0I2 261 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 HIVEP1P15822 2718 aa20.34■□□□□ 0.85
LSM4-201ENST00000252816 LIPT2A6NK58 231 aa20.33■□□□□ 0.85
LSM4-201ENST00000252816 TMEM229AB2RXF0 380 aa20.33■□□□□ 0.85
LSM4-201ENST00000252816 ATP8B1O43520 1251 aa20.33■□□□□ 0.85
LSM4-201ENST00000252816 HTR2AP28223 471 aa20.33■□□□□ 0.85
LSM4-201ENST00000252816 IDUAP35475 653 aa20.33■□□□□ 0.85
LSM4-201ENST00000252816 ART1P52961 327 aa20.33■□□□□ 0.85
LSM4-201ENST00000252816 PCBP3P57721 371 aaKnown RBP20.33■□□□□ 0.85
LSM4-201ENST00000252816 DMTNQ08495 405 aa20.33■□□□□ 0.85
LSM4-201ENST00000252816 CEACAM7Q14002 265 aa20.33■□□□□ 0.85
LSM4-201ENST00000252816 TRMT5Q32P41 509 aaKnown RBP20.33■□□□□ 0.85
LSM4-201ENST00000252816 Q6ZT83 130 aa20.33■□□□□ 0.85
LSM4-201ENST00000252816 NET1Q7Z628 596 aaPredicted RBP20.33■□□□□ 0.85
LSM4-201ENST00000252816 S100PBPQ96BU1 408 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms