RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 EIF2B1Q14232 305 aaKnown RBP11.91□□□□□ -0.5
USP40-201ENST00000251722 ZNF600Q6ZNG1 722 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 PIANPQ8IYJ0 282 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 GIMAP5Q96F15 307 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 ZNF300Q96RE9 604 aaPredicted RBP11.91□□□□□ -0.5
USP40-201ENST00000251722 SPIN2AQ99865 258 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 SPIN2BQ9BPZ2 258 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 MMP28Q9H239 520 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 OR51J1Q9H342 316 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 CLMPQ9H6B4 373 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 LRP5O75197 1615 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 ACTL6BO94805 426 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 LCATP04180 440 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 GPR4P46093 362 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 C1orf53Q5VUE5 145 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 DHRS4L2Q6PKH6 230 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 PRSS48Q7RTY5 328 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 TMPRSS12Q86WS5 348 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 GPR148Q8TDV2 347 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 FAM46AQ96IP4 442 aaKnown RBP11.91□□□□□ -0.5
USP40-201ENST00000251722 ATOH8Q96SQ7 321 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 BARD1Q99728 777 aaKnown RBP11.91□□□□□ -0.5
USP40-201ENST00000251722 MICU1Q9BPX6 476 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 CORINQ9Y5Q5 1042 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 LOC105369274A0A096LPK9 316 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 RPS10-NUDT3A0A1W2PQS6 291 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 ZNF98A6NK75 572 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 KIAA0513O60268 411 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 HEXAP06865 529 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 PPP3CBP16298 524 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 RPS10P46783 165 aaKnown RBP11.91□□□□□ -0.5
USP40-201ENST00000251722 MTFR2Q6P444 385 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 C6orf15Q6UXA7 325 aaPredicted RBP11.91□□□□□ -0.5
USP40-201ENST00000251722 OR4N4Q8N0Y3 316 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 STK35Q8TDR2 534 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 SLC25A43Q8WUT9 341 aaPredicted RBP11.91□□□□□ -0.5
USP40-201ENST00000251722 FAM118AQ9NWS6 357 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 MOKQ9UQ07 419 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 RNF212BA8MTL3 300 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 RGS13O14921 159 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 TFP02787 698 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 HMGN2P05204 90 aaKnown RBP11.91□□□□□ -0.5
USP40-201ENST00000251722 PRKACGP22612 351 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 SLC1A3P43003 542 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 CSNK1EP49674 416 aaKnown RBP11.91□□□□□ -0.5
USP40-201ENST00000251722 HTR6P50406 440 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 LIMK1P53667 647 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 TAS2R31P59538 309 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 S100A10P60903 97 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 SNX29P2Q8IUI4 249 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 INTS14Q96SY0 518 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 MED18Q9BUE0 208 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 ZNF701Q9NV72 531 aaPredicted RBP11.91□□□□□ -0.5
USP40-201ENST00000251722 EXTL2Q9UBQ6 330 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 LHX6Q9UPM6 363 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 CAMK2AQ9UQM7 478 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 IMPA2O14732 288 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 CTNSO60931 367 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 MRPL33O75394 65 aaKnown RBP11.91□□□□□ -0.5
USP40-201ENST00000251722 SLCO2B1O94956 709 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 ABHD5Q8WTS1 349 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 LYSMD1Q96S90 227 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 ACPTQ9BZG2 426 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 AGPAT4Q9NRZ5 378 aa11.91□□□□□ -0.5
USP40-201ENST00000251722 ZNF264O43296 627 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 FASLGP48023 281 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 SOX2P48431 317 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 IDH3GP51553 393 aaPredicted RBP11.9□□□□□ -0.5
USP40-201ENST00000251722 MAT1AQ00266 395 aaKnown RBP11.9□□□□□ -0.5
USP40-201ENST00000251722 C19orf57Q0VDD7 668 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 TMEM41BQ5BJD5 291 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 TECPR1Q7Z6L1 1165 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 OR7D2Q96RA2 312 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 NUDT19A8MXV4 375 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 HSBP1L1C9JCN9 74 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 PITPNBP48739 271 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 ERVK-16P61578 105 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 RPS26P62854 115 aaKnown RBP11.9□□□□□ -0.5
USP40-201ENST00000251722 SLC16A9Q7RTY1 509 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 NAGSQ8N159 534 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 ZNF611Q8N823 705 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 RLN3Q8WXF3 142 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 LCORQ96JN0 433 aaPredicted RBP11.9□□□□□ -0.5
USP40-201ENST00000251722 ANKRD19PQ9H560 264 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 THSD1Q9NS62 852 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 A0A0G2JMP0 313 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 H3BML4 177 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 DFFBO76075 338 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 TSPAN15O95858 294 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 SCGB1D2O95969 90 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 CA5AP35218 305 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 POU3F4P49335 361 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 RAB40BQ12829 278 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 CDHR3Q6ZTQ4 885 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 OR4M2Q8NGB6 313 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 MVB12AQ96EY5 273 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 OR6C1Q96RD1 312 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 DYNLRB1Q9NP97 96 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 PCDHB10Q9UN67 800 aa11.9□□□□□ -0.5
USP40-201ENST00000251722 NAP1L6A6NFF2 107 aa11.9□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms