RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 OR2T7P0C7T2 308 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 ETV5P41161 510 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 PLCXD3Q63HM9 321 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 TMEM185AQ8NFB2 350 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 OR2T27Q8NH04 317 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 ZNF436Q9C0F3 470 aaPredicted RBP12.64□□□□□ -0.39
SF3A1-201ENST00000215793 ATG4BQ9Y4P1 393 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 MYH3P11055 1940 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 CER1O95813 267 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 TAS2R46P59540 309 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 SMN1Q16637 294 aaKnown RBP12.64□□□□□ -0.39
SF3A1-201ENST00000215793 AGBL5Q8NDL9 886 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 OR4M1Q8NGD0 313 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 OR56B4Q8NH76 319 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 MUL1Q969V5 352 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 SLC41A2Q96JW4 573 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 CENPOQ9BU64 300 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 VN1R3Q9BXE9 311 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 C20orf27Q9GZN8 174 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 NDUFAF4Q9P032 175 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 DNMT3BQ9UBC3 853 aaKnown RBP12.64□□□□□ -0.39
SF3A1-201ENST00000215793 CD300AQ9UGN4 299 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 TRAPPC2LH3BP13 241 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 J3KTA2 159 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 GFRA2O00451 464 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 CTDSP2O14595 271 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 TK1P04183 234 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 STK11Q15831 433 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 LEXMQ3ZCV2 418 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 ACTBL2Q562R1 376 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 GLB1L2Q8IW92 636 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 BPIFB2Q8N4F0 458 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 ZNF610Q8N9Z0 462 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 OR13C2Q8NGS9 318 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 RSPRY1Q96DX4 576 aa12.64□□□□□ -0.39
SF3A1-201ENST00000215793 ZNF578Q96N58 590 aaPredicted RBP12.64□□□□□ -0.39
SF3A1-201ENST00000215793 TRBV4-1A0A0J9YWV2 114 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 MEIS3P1A6NDR6 274 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 TMEM212A6NML5 194 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 IGHEP01854 428 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 FURINP09958 794 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 ACPPP15309 386 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 ILKQ13418 452 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 TATDN3Q17R31 274 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 HENMT1Q5T8I9 393 aaKnown RBP12.63□□□□□ -0.39
SF3A1-201ENST00000215793 OR2G6Q5TZ20 316 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 Q6ZSR9 355 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 TCTEX1D2Q8WW35 142 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 ELP4Q96EB1 424 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 ANKRD19PQ9H560 264 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 C19orf12Q9NSK7 152 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 A0A1W2PS29 197 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 TSPAN11A1L157 253 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 SSX4O60224 188 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 GASTP01350 101 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 EIF2DP41214 584 aaKnown RBP12.63□□□□□ -0.39
SF3A1-201ENST00000215793 FAM78AQ5JUQ0 283 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 ZNF679Q8IYX0 411 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 C19orf47Q8N9M1 422 aaKnown RBP12.63□□□□□ -0.39
SF3A1-201ENST00000215793 CPT1CQ8TCG5 803 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 RLN3Q8WXF3 142 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 OR14A2Q96R54 314 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 MICU1Q9BPX6 476 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 WDR83Q9BRX9 315 aaKnown RBP12.63□□□□□ -0.39
SF3A1-201ENST00000215793 GON7Q9BXV9 100 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 RCE1Q9Y256 329 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 MYH7BA7E2Y1 1941 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 MRPL33O75394 65 aaKnown RBP12.63□□□□□ -0.39
SF3A1-201ENST00000215793 F13BP05160 661 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 UBBP0CG47 229 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 UBCP0CG48 685 aaKnown RBP12.63□□□□□ -0.39
SF3A1-201ENST00000215793 MMP12P39900 470 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 SPCS2Q15005 226 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 PLK5Q496M5 336 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 ADAMTSL4Q6UY14 1074 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 MBOAT2Q6ZWT7 520 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 FCRLAQ7L513 359 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 CD163Q86VB7 1156 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 PGBD5Q8N414 524 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 KATNB1Q9BVA0 655 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 MS4A8Q9BY19 250 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 C1orf198Q9H425 327 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 YARS2Q9Y2Z4 477 aaKnown RBP12.63□□□□□ -0.39
SF3A1-201ENST00000215793 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.63□□□□□ -0.39
SF3A1-201ENST00000215793 SLC43A1O75387 559 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 GJB3O75712 270 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 MT-ND4P03905 459 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 SLC1A3P43003 542 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 MSMO1Q15800 293 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 LPAL2Q16609 132 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 UBE2NLQ5JXB2 153 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 ACBD4Q8NC06 268 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 METTL9Q9H1A3 318 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 SAV1Q9H4B6 383 aaPredicted RBP12.63□□□□□ -0.39
SF3A1-201ENST00000215793 PRMT8Q9NR22 394 aaPredicted RBP12.63□□□□□ -0.39
SF3A1-201ENST00000215793 GHRLQ9UBU3 117 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 NME7Q9Y5B8 376 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 WIF1Q9Y5W5 379 aa12.63□□□□□ -0.39
SF3A1-201ENST00000215793 CDC14CA4D256 554 aa12.62□□□□□ -0.39
SF3A1-201ENST00000215793 SERINC4A6NH21 518 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms