RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 HOXA9P31269 272 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 EPHX2P34913 555 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 HSPA1LP34931 641 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ADRA1AP35348 466 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 HPCAL1P37235 193 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 MAP3K8P41279 467 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CXCL5P42830 114 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PTGFRP43088 359 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CSNK1DP48730 415 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CAMLGP49069 296 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 DHPSP49366 369 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 NUMBP49757 651 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PRKXP51817 358 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 KPNA2P52292 529 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 EFNB2P52799 333 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 HSPA2P54652 639 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 FGF8P55075 233 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 MTTPP55157 894 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SH3BGRP55822 239 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 BIDP55957 195 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 DLX1P56177 255 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 TAS2R19P59542 299 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PRPS1P60891 318 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 HERVK_113P61574 105 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 TIMM10P62072 90 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CACNG7P62955 275 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 IRX3P78415 501 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 NTHL1P78549 312 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ARF5P84085 180 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 BDH1Q02338 343 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CHRNB3Q05901 458 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 REG3AQ06141 175 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 GABPB1Q06547 395 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 RGS1Q08116 209 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 RIPPLY1Q0D2K3 151 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CCDC173Q0VFZ6 552 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SPP2Q13103 211 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 C1orf61Q13536 156 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 GAMTQ14353 236 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 GRB7Q14451 532 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 KIAA0087Q14695 138 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 GNMTQ14749 295 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 NRF1Q16656 503 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 DEFB116Q30KQ4 102 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 NSUN5P1Q3KNT7 163 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CHRFAM7AQ494W8 412 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 BCL7AQ4VC05 210 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 FAM74A3Q4VXF1 159 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 LINC00483Q53H64 154 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CARD16Q5EG05 197 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PIGGQ5H8A4 983 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PAGE3Q5JUK9 113 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 LY6G6FQ5SQ64 297 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 LDLRAP1Q5SW96 308 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 KPRPQ5T749 579 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 OR6B2Q6IFH4 312 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ETFRF1Q6IPR1 90 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 FAM71E1Q6IPT2 247 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 FAM71F2Q6NXP2 309 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 C1orf94Q6P1W5 598 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 DUX4L9Q6RFH8 374 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 CBLN3Q6UW01 205 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 DNM1P46Q6ZS02 220 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ACOT7LQ6ZUV0 252 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 GDPD3Q7L5L3 318 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 LPCAT2Q7L5N7 544 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ARCQ7LC44 396 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 C16orf62Q7Z3J2 963 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ERASQ7Z444 233 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 TAF8Q7Z7C8 310 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 HMGN2P46Q86SG4 172 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 TMEM17Q86X19 198 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CBWD2Q8IUF1 395 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 MYOCDQ8IZQ8 938 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 KDM8Q8N371 416 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 RNF182Q8N6D2 247 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 FAM86B1Q8N7N1 296 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ZNF713Q8N859 430 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 CYB561D1Q8N8Q1 229 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 MRPL43Q8N983 215 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 SPC24Q8NBT2 197 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 LEMD2Q8NC56 503 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CCNYQ8ND76 341 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 FAM71CQ8NEG0 241 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 DUSP18Q8NEJ0 188 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 OR10G3Q8NGC4 313 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 OR4D9Q8NGE8 314 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 OR8H1Q8NGG4 311 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 OR10G9Q8NGN4 311 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 OR9G1Q8NH87 305 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PSMA8Q8TAA3 256 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 UBALD1Q8TB05 177 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ACER1Q8TDN7 264 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ZCCHC13Q8WW36 166 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 SELENOMQ8WWX9 145 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 IL1F10Q8WWZ1 152 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ARPC1AQ92747 370 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 FRZBQ92765 325 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 OSTF1Q92882 214 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 FGF14Q92915 247 aa0.17□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms