RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 UBQLN3Q9H347 655 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 VCX3AQ9NNX9 186 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 P4HTMQ9NXG6 502 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 GPR83Q9NYM4 423 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 NDUFA13Q9P0J0 144 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 OSGIN1Q9UJX0 560 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 YARS2Q9Y2Z4 477 aaKnown RBP15.35■□□□□ 0.05
CLN3-252ENST00000636907 MRPS18BQ9Y676 258 aaKnown RBP15.35■□□□□ 0.05
CLN3-252ENST00000636907 SURF4O15260 269 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 CDC40O60508 579 aaKnown RBP eCLIP15.35■□□□□ 0.05
CLN3-252ENST00000636907 ICAM2P13598 275 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 BMP7P18075 431 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 MLF1P58340 268 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 EGR4Q05215 589 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 OCLNQ16625 522 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 SLC25A30Q5SVS4 291 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 PRSS48Q7RTY5 328 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 GPR141Q7Z602 305 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 NACC2Q96BF6 587 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 TEX12Q9BXU0 123 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 PRRG3Q9BZD7 231 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 RBM38Q9H0Z9 239 aaKnown RBP15.35■□□□□ 0.05
CLN3-252ENST00000636907 METTL7AQ9H8H3 244 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 MCCC2Q9HCC0 563 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 TAS2R10Q9NYW0 307 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 GPR52Q9Y2T5 361 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 HRH3Q9Y5N1 445 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 ANKUB1A6NFN9 424 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 BHLHE40O14503 412 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 TM4SF5O14894 197 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 MRPS14O60783 128 aaKnown RBP15.34■□□□□ 0.05
CLN3-252ENST00000636907 CCNA2P20248 432 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 CASP3P42574 277 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 MAP2K4P45985 399 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 MASP1P48740 699 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 EMX1Q04741 257 aaPredicted RBP15.34■□□□□ 0.05
CLN3-252ENST00000636907 RAB39AQ14964 217 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 ZBED5Q49AG3 693 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 SYT14P1Q58G82 188 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 POMZP3Q6PJE2 187 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 OPN5Q6U736 354 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 IL20RBQ6UXL0 311 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 ARMC10Q8N2F6 343 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 LRRC17Q8N6Y2 441 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 MYDGFQ969H8 173 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 LRR1Q96L50 414 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 MED11Q9P086 117 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 PCDHGB1Q9Y5G3 927 aa15.34■□□□□ 0.05
CLN3-252ENST00000636907 CHCHD2Q9Y6H1 151 aaPredicted RBP15.34■□□□□ 0.05
CLN3-252ENST00000636907 KNTC1P50748 2209 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 PCNX3Q9H6A9 2034 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 PROB1E7EW31 1015 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 H3BSA7 217 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 TP53I11O14683 189 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 OR7A10O76100 309 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 IGF2P01344 180 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 HMGN1P05114 100 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 CDK1P06493 297 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 STSP08842 583 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 CXCR1P25024 350 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 C21orf33P30042 268 aaPredicted RBP15.33■□□□□ 0.04
CLN3-252ENST00000636907 GRK5P34947 590 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 SLC15A1P46059 708 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 SLC9A3P48764 834 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 SSR4P51571 173 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 MVKQ03426 396 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 CHAF1BQ13112 559 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 MEDAGQ5VYS4 303 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 BORAQ6PGQ7 559 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 ASCL5Q7RTU5 278 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 ASB15Q8WXK1 588 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 ZNF582Q96NG8 517 aaPredicted RBP15.33■□□□□ 0.04
CLN3-252ENST00000636907 PPP4R1LQ9P1A2 415 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 WIF1Q9Y5W5 379 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 CEPT1Q9Y6K0 416 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 ZNF292O60281 2723 aa15.33■□□□□ 0.04
CLN3-252ENST00000636907 IGLV3-32A0A0A0MS00 114 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 SLC2A10O95528 541 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 FADS2O95864 444 aaKnown RBP15.32■□□□□ 0.04
CLN3-252ENST00000636907 POLR2HP52434 150 aaKnown RBP15.32■□□□□ 0.04
CLN3-252ENST00000636907 SUMO3P55854 103 aaPredicted RBP15.32■□□□□ 0.04
CLN3-252ENST00000636907 ZNF74Q16587 644 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 RTL4Q6ZR62 310 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 GRINAQ7Z429 371 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 CYP4Z2PQ8N1L4 340 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 LNX2Q8N448 690 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 FAR1Q8WVX9 515 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 NKD1Q969G9 470 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 MUL1Q969V5 352 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 TUBA1CQ9BQE3 449 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 IFT27Q9BW83 186 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 FAM117AQ9C073 453 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 LHPPQ9H008 270 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 SDHAF3Q9NRP4 125 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 MED17Q9NVC6 651 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 CNOT2Q9NZN8 540 aaKnown RBP15.32■□□□□ 0.04
CLN3-252ENST00000636907 IL17BQ9UHF5 180 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 ZNF337Q9Y3M9 751 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 TMED7-TICAM2A0A0A6YYA0 188 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 HTR3EA5X5Y0 456 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms