RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ARSGQ96EG1 525 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 SCMH1Q96GD3 660 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 MRGPRX1Q96LB2 322 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 TMEM106CQ9BVX2 250 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 NDEL1Q9GZM8 345 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 CD93Q9NPY3 652 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.75□□□□□ -0.53
LINC00540-203ENST00000631321 CPNE7Q9UBL6 633 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 CDH23Q9H251 3354 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 A0A0A6YYJ9 748 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 NPIPB9F8W1W9 429 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 UBL3O95164 117 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 NDUFB2O95178 105 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 GYPBP06028 91 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 UCHL1P09936 223 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 ACTA2P62736 377 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 ACTG2P63267 376 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 ILF3Q12906 894 aaKnown RBP eCLIP11.75□□□□□ -0.53
LINC00540-203ENST00000631321 CDONQ4KMG0 1287 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 CEP78Q5JTW2 689 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 CREB3L2Q70SY1 520 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 DEDD2Q8WXF8 326 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 PELI1Q96FA3 418 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 GFM1Q96RP9 751 aaKnown RBP11.75□□□□□ -0.53
LINC00540-203ENST00000631321 MRPL39Q9NYK5 338 aaKnown RBP11.75□□□□□ -0.53
LINC00540-203ENST00000631321 LINC01565O15544 149 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 CPNE3O75131 537 aaKnown RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 GATBO75879 557 aaKnown RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 EPXP11678 715 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 HIST1H1CP16403 213 aaKnown RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 MMP15P51511 669 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 CRYZQ08257 329 aaKnown RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 MRPL28Q13084 256 aaKnown RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 FGFBP1Q14512 234 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 CCDC85BQ15834 202 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 NTRK2Q16620 822 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 ULK3Q6PHR2 472 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 ZNF550Q7Z398 422 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 RFLNBQ8N5W9 214 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 DNAJC5GQ8N7S2 189 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 OR52E2Q8NGJ4 325 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 OR13C5Q8NGS8 318 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 OR5H6Q8NGV6 325 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 PATE1Q8WXA2 126 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 YIPF5Q969M3 257 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 VSTM2LQ96N03 204 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 ERMAPQ96PL5 475 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 CNN2Q99439 309 aaKnown RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 GHITMQ9H3K2 345 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 HRASLS2Q9NWW9 162 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 NUBP2Q9Y5Y2 271 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 A0A1B0GVC2 190 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 A0A1W2PRG6 482 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 A6NIN4 97 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 C10orf142B7Z368 130 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 OR10H2O60403 315 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 RDH16O75452 317 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 ARL6IP5O75915 188 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 OR2B3O76000 313 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 ATF1P18846 271 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 AKT2P31751 481 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 CTHP32929 405 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 GDI2P50395 445 aaKnown RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 GBX2P52951 348 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 VSX2P58304 361 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 GNG2P59768 71 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 RPS11P62280 158 aaKnown RBP eCLIP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 ZNHIT3Q15649 155 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 BAIAP2L2Q6UXY1 529 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 OVCH1Q7RTY7 1134 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 ZNF784Q8NCA9 323 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 OR14A16Q8NHC5 309 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 THAP4Q8WY91 577 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 HSD17B8Q92506 261 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 ZMYND19Q96E35 227 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-203ENST00000631321 HYLS1Q96M11 299 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 DDOQ99489 341 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 DPAGT1Q9H3H5 408 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 KLHL1Q9NR64 748 aa11.74□□□□□ -0.53
LINC00540-203ENST00000631321 EFCAB7A8K855 629 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 FLRT2O43155 660 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 FOXS1O43638 330 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 GSTZ1O43708 216 aaPredicted RBP11.73□□□□□ -0.53
LINC00540-203ENST00000631321 DHFRP00374 187 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 DIO1P49895 249 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 SIRPAP78324 504 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 PITPNAQ00169 270 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 ISXQ2M1V0 245 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 BTBD16Q32M84 506 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 CCDC58Q4VC31 144 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 TP53I3Q53FA7 332 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 HSD17B12Q53GQ0 312 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 RPL22L1Q6P5R6 122 aaKnown RBP11.73□□□□□ -0.53
LINC00540-203ENST00000631321 ZC3H14Q6PJT7 736 aaKnown RBP11.73□□□□□ -0.53
LINC00540-203ENST00000631321 KIRREL2Q6UWL6 708 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 UNQ9370/PRO34162Q6UXP9 181 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 SLITRK4Q8IW52 837 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 SLC35F2Q8IXU6 374 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 CMIPQ8IY22 773 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 ZNF614Q8N883 585 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms