RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 SPATA9Q9BWV2 254 aa12.66□□□□□ -0.38
PNKP-223ENST00000629179 KLHL4Q9C0H6 718 aa12.66□□□□□ -0.38
PNKP-223ENST00000629179 CLEC4MQ9H2X3 399 aaPredicted RBP12.66□□□□□ -0.38
PNKP-223ENST00000629179 BCL2L10Q9HD36 194 aa12.66□□□□□ -0.38
PNKP-223ENST00000629179 NDRG3Q9UGV2 375 aa12.66□□□□□ -0.38
PNKP-223ENST00000629179 NDUFAF1Q9Y375 327 aa12.66□□□□□ -0.38
PNKP-223ENST00000629179 TMED7Q9Y3B3 224 aa12.66□□□□□ -0.38
PNKP-223ENST00000629179 CADP27708 2225 aa12.66□□□□□ -0.38
PNKP-223ENST00000629179 F8P00451 2351 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 MED13LQ71F56 2210 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 TMEM72A0PK05 275 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 EVPLLA8MZ36 301 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 C16orf97H3BN30 126 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 FAAHO00519 579 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 YES1P07947 543 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 THBS1P07996 1170 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 PRG2P13727 222 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 GPX2P18283 190 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 CCKARP32238 428 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 SLC1A3P43003 542 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 HTR3AP46098 478 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 PCYT1AP49585 367 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 POLR2HP52434 150 aaKnown RBP12.65□□□□□ -0.38
PNKP-223ENST00000629179 ARFIP2P53365 341 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 CDK6Q00534 326 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 ZNF311Q5JNZ3 666 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 TMEM201Q5SNT2 666 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 RNF220Q5VTB9 566 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 PRAMEF8Q5VWM4 474 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 PRAMEF7Q5VXH5 474 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 ANKRD34AQ69YU3 496 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 C22orf34Q6ZV56 151 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 ZNF550Q7Z398 422 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 DHDDSQ86SQ9 333 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 CDC20BQ86Y33 519 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 SLC43A2Q8N370 569 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 BBS10Q8TAM1 723 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 ZNF775Q96BV0 537 aaPredicted RBP12.65□□□□□ -0.38
PNKP-223ENST00000629179 CPPED1Q9BRF8 314 aaPredicted RBP12.65□□□□□ -0.38
PNKP-223ENST00000629179 RSPO3Q9BXY4 272 aaPredicted RBP12.65□□□□□ -0.38
PNKP-223ENST00000629179 ADAM19Q9H013 955 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 LIME1Q9H400 295 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 CACYBPQ9HB71 228 aaKnown RBP12.65□□□□□ -0.38
PNKP-223ENST00000629179 MED4Q9NPJ6 270 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 KLHL28Q9NXS3 571 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 KLHL13Q9P2N7 655 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 ING1Q9UK53 422 aaPredicted RBP12.65□□□□□ -0.38
PNKP-223ENST00000629179 IFT52Q9Y366 437 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 TESMINQ9Y4I5 508 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 SPIN1Q9Y657 262 aaPredicted RBP12.65□□□□□ -0.38
PNKP-223ENST00000629179 GMEB1Q9Y692 573 aa12.65□□□□□ -0.38
PNKP-223ENST00000629179 TEP1Q99973 2627 aaKnown RBP12.65□□□□□ -0.38
PNKP-223ENST00000629179 OTOGQ6ZRI0 2925 aa12.65□□□□□ -0.39
PNKP-223ENST00000629179 ALPK2Q86TB3 2170 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 ENO4A6NNW6 628 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 CASKO14936 926 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 ANGPT2O15123 496 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 FRS3O43559 492 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 CYTIPO60759 359 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 FESP07332 822 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 UQCRBP14927 111 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 CSNK2A1P68400 391 aaPredicted RBP12.64□□□□□ -0.39
PNKP-223ENST00000629179 HOXC5Q00444 222 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 RASGEF1BQ0VAM2 473 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 SELPLGQ14242 412 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 POU4F3Q15319 338 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 ADRM1Q16186 407 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 FBXW10Q5XX13 1052 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 REEP3Q6NUK4 255 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 STAC2Q6ZMT1 411 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 BEND4Q6ZU67 534 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 SERPINA11Q86U17 422 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 MTDHQ86UE4 582 aaKnown RBP12.64□□□□□ -0.39
PNKP-223ENST00000629179 CADM2Q8N3J6 435 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 DPP10Q8N608 796 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 TSPEARQ8WU66 669 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 ZNF300Q96RE9 604 aaPredicted RBP12.64□□□□□ -0.39
PNKP-223ENST00000629179 CGREF1Q99674 301 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 PSD2Q9BQI7 771 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 MED18Q9BUE0 208 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 ARMC7Q9H6L4 198 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 CORO2BQ9UQ03 480 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 HDGFL3Q9Y3E1 203 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 CSMD2Q7Z408 3487 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 ARID1AO14497 2285 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 DSCAMO60469 2012 aa12.64□□□□□ -0.39
PNKP-223ENST00000629179 ZC3H12DA2A288 527 aaKnown RBP12.63□□□□□ -0.39
PNKP-223ENST00000629179 FBP2O00757 339 aa12.63□□□□□ -0.39
PNKP-223ENST00000629179 ZNF208O43345 1280 aa12.63□□□□□ -0.39
PNKP-223ENST00000629179 PMS2P2O95744 297 aa12.63□□□□□ -0.39
PNKP-223ENST00000629179 ETS2P15036 469 aa12.63□□□□□ -0.39
PNKP-223ENST00000629179 FKBP2P26885 142 aaKnown RBP12.63□□□□□ -0.39
PNKP-223ENST00000629179 CLK1P49759 484 aaKnown RBP12.63□□□□□ -0.39
PNKP-223ENST00000629179 OR2B6P58173 313 aa12.63□□□□□ -0.39
PNKP-223ENST00000629179 MTPNP58546 118 aa12.63□□□□□ -0.39
PNKP-223ENST00000629179 COPZ1P61923 177 aa12.63□□□□□ -0.39
PNKP-223ENST00000629179 BNIP2Q12982 314 aa12.63□□□□□ -0.39
PNKP-223ENST00000629179 NFYCQ13952 458 aa12.63□□□□□ -0.39
PNKP-223ENST00000629179 SCARB2Q14108 478 aa12.63□□□□□ -0.39
PNKP-223ENST00000629179 ZSWIM7Q19AV6 140 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms