RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SVEP1Q4LDE5 3571 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 SERINC4A6NH21 518 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 VWC2LB2RUY7 222 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 M0R1B8 84 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 AZIN1O14977 448 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 KIAA0513O60268 411 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 DNAJA2O60884 412 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 STX11O75558 287 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 RAD51DO75771 328 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 NTN1O95631 604 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 PMS2P2O95744 297 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 CSTAP01040 98 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 TGFAP01135 160 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 CRYAAP02489 173 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 TFPIP10646 304 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 ZNF23P17027 643 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 SDC1P18827 310 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 IGHV1-2P23083 117 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 IGFBP5P24593 272 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 SRP14P37108 136 aaKnown RBP5.53□□□□□ -1.52
CUX1-220ENST00000607092 NR4A2P43354 598 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 CCT3P49368 545 aaKnown RBP5.53□□□□□ -1.52
CUX1-220ENST00000607092 PRPS1P60891 318 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 MERTKQ12866 999 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 MAD2L1Q13257 205 aaPredicted RBP5.53□□□□□ -1.52
CUX1-220ENST00000607092 GNA13Q14344 377 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 GGTLC2Q14390 218 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 KIAA0040Q15053 153 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 QPRTQ15274 297 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 GABRA6Q16445 453 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 IQCCQ4KMZ1 466 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 TIGD2Q4W5G0 525 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 EXOSC6Q5RKV6 272 aaKnown RBP5.53□□□□□ -1.52
CUX1-220ENST00000607092 BEND6Q5SZJ8 279 aaPredicted RBP5.53□□□□□ -1.52
CUX1-220ENST00000607092 ATAD3BQ5T9A4 648 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 REP15Q6BDI9 236 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 CBLN3Q6UW01 205 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 ZYG11AQ6WRX3 759 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 C12orf54Q6X4T0 127 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 SLC46A3Q7Z3Q1 461 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 GRINAQ7Z429 371 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 TREML1Q86YW5 311 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 ZNF614Q8N883 585 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 CCDC63Q8NA47 563 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 POMGNT2Q8NAT1 580 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 NOA1Q8NC60 698 aaKnown RBP5.53□□□□□ -1.52
CUX1-220ENST00000607092 OR52N5Q8NH56 324 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 PSMA8Q8TAA3 256 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 IFT81Q8WYA0 676 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 FAM120BQ96EK7 910 aaKnown RBP5.53□□□□□ -1.52
CUX1-220ENST00000607092 ARL5BQ96KC2 179 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 FCRL1Q96LA6 429 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 PPP3R2Q96LZ3 170 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 TSSK3Q96PN8 268 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 KCNA7Q96RP8 456 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 LAT2Q9GZY6 243 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 RAB1BQ9H0U4 201 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 VIPAS39Q9H9C1 493 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 CHODLQ9H9P2 273 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 EML4Q9HC35 981 aaKnown RBP5.53□□□□□ -1.52
CUX1-220ENST00000607092 NPAP1Q9NZP6 1156 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 PSMC3IPQ9P2W1 217 aaPredicted RBP5.53□□□□□ -1.52
CUX1-220ENST00000607092 CHRNA9Q9UGM1 479 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 ATP6V1HQ9UI12 483 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 PRSS50Q9UI38 385 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 PCDHGB4Q9UN71 923 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 CUBNO60494 3623 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 NOTCH1P46531 2555 aa5.53□□□□□ -1.52
CUX1-220ENST00000607092 A0A1W2PNR3 127 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 A6NHS1 94 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 AKAP10O43572 662 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 EFNA2O43921 213 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 VAMP5O95183 116 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 PRPS1L1P21108 318 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 SHC1P29353 583 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 MPGP29372 298 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 SERPINF1P36955 418 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 SLC1A3P43003 542 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 KHKP50053 298 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 PPOXP50336 477 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 ANXA11P50995 505 aaKnown RBP5.52□□□□□ -1.53
CUX1-220ENST00000607092 CHN2P52757 468 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 RPL38P63173 70 aaKnown RBP5.52□□□□□ -1.53
CUX1-220ENST00000607092 SLC35A1P78382 337 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 TXNL4AP83876 142 aaKnown RBP5.52□□□□□ -1.53
CUX1-220ENST00000607092 HPCAP84074 193 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 SLC7A5Q01650 507 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 RUNX1T1Q06455 604 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 ZNF141Q15928 474 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 C3orf36Q3SXR2 165 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 FAM153CQ494X1 144 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 CCNJQ5T5M9 372 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 LIPMQ5VYY2 423 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 EMBQ6PCB8 327 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 CASP12Q6UXS9 341 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 MEX3DQ86XN8 651 aaKnown RBP5.52□□□□□ -1.53
CUX1-220ENST00000607092 VPS37AQ8NEZ2 397 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 OR4F15Q8NGB8 312 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 SGMS2Q8NHU3 365 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 RFWD2Q8NHY2 731 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms