RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 IGKV1D-16P01601 117 aa18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 CTSBP07858 339 aa18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 SNRPBP14678 240 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 VSX2P58304 361 aaPredicted RBP18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 PSG6Q00889 435 aa18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 MRPL28Q13084 256 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 SLC36A2Q495M3 483 aa18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 FAM205BPQ63HN1 556 aa18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 LYPD8Q6UX82 237 aa18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 ZNF761Q86XN6 746 aaPredicted RBP18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 CSNK1A1LQ8N752 337 aa18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 ZNF426Q9BUY5 554 aa18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 DNAJB12Q9NXW2 375 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 NCKAP1Q9Y2A7 1128 aa18.63■□□□□ 0.57
SHKBP1-225ENST00000600733 RDH16O75452 317 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 EGFP01133 1207 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 CD3GP09693 182 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 HIST1H1CP16403 213 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 SDHBP21912 280 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 SLC6A6P31641 620 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 NAA10P41227 235 aaPredicted RBP18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 BTG1P62324 171 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 ACTC1P68032 377 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 ACTA1P68133 377 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 FAM53BQ14153 422 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 FCN2Q15485 313 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 BICRALQ6AI39 1079 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 PYHIN1Q6K0P9 492 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 ESPNLQ6ZVH7 1005 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 C7orf57Q8NEG2 295 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 SNAPC3Q92966 411 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 TMEM106CQ9BVX2 250 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 LRRN3E7EW58 273 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 APBB3O95704 486 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 ATF1P18846 271 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 ARHGAP11AQ6P4F7 1023 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 FAM98AQ8NCA5 519 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 THAP4Q8WY91 577 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 PELI1Q96FA3 418 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 MTIF3Q9H2K0 278 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 LRRN3Q9H3W5 708 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 DZANK1Q9NVP4 752 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 HRASLS2Q9NWW9 162 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 FBXL21Q9UKT6 434 aa18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 MRPS7Q9Y2R9 242 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-225ENST00000600733 C2orf74A8MZ97 194 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 OR10H2O60403 315 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 IFNGP01579 166 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 SPTBP11277 2137 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 DEFB110Q30KQ9 67 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 LYPD4Q6UWN0 246 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 LRRC17Q8N6Y2 441 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 SLC2A12Q8TD20 617 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 RSC1A1Q92681 617 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 PHF21AQ96BD5 680 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 ZFP3Q96NJ6 502 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 BAIAP2Q9UQB8 552 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 YBX2Q9Y2T7 364 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 HRKO00198 91 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 HNRNPA2B1P22626 353 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 PBX2P40425 430 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 DGCR2P98153 550 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 KIAA1324Q6UXG2 1013 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 RNF44Q7L0R7 432 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 MS4A15Q8N5U1 240 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 ASB12Q8WXK4 309 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 MRGPRX1Q96LB2 322 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 CPNE7Q9UBL6 633 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 CHRNA9Q9UGM1 479 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 ADAM18Q9Y3Q7 739 aa18.61■□□□□ 0.57
SHKBP1-225ENST00000600733 IMPA2O14732 288 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 FABP7O15540 132 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 GDI2P50395 445 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 GNG2P59768 71 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 POU4F2Q12837 409 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 NDUFAF6Q330K2 333 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 GXYLT1Q4G148 440 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 CCDC58Q4VC31 144 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 C9orf50Q5SZB4 431 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 KIRREL2Q6UWL6 708 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 ZNF655Q8N720 491 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 FRMD1Q8N878 549 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 OR9A4Q8NGU2 314 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 ZNRF4Q8WWF5 429 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 YIPF5Q969M3 257 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 MED28Q9H204 178 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 TCEAL2Q9H3H9 227 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 BRD7Q9NPI1 651 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 POLE3Q9NRF9 147 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 DTX4Q9Y2E6 619 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 IER3IP1Q9Y5U9 82 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 NPFFR2Q9Y5X5 522 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 MCIDASD6RGH6 385 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 EPXP11678 715 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 MTFR2Q6P444 385 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 TEX19Q8NA77 164 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 PMM1Q92871 262 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 SMIM19Q96E16 107 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 CCDC3Q9BQI4 270 aa18.6■□□□□ 0.57
SHKBP1-225ENST00000600733 ORAI3Q9BRQ5 295 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms