RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 SLC38A5Q8WUX1 472 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 HSD17B8Q92506 261 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 GTF2H4Q92759 462 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 DNAJA3Q96EY1 480 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 AURKBQ96GD4 344 aaPredicted RBP13.37□□□□□ -0.27
LIG1-215ENST00000597901 PLPPR2Q96GM1 343 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 ZNF300Q96RE9 604 aaPredicted RBP13.37□□□□□ -0.27
LIG1-215ENST00000597901 OR11A1Q9GZK7 315 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 RLIMQ9NVW2 624 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 PRSS50Q9UI38 385 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 OSGIN1Q9UJX0 560 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 TRAPPC4Q9Y296 219 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 TMED7Q9Y3B3 224 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 HDGFL3Q9Y3E1 203 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 PCDHB14Q9Y5E9 798 aa13.37□□□□□ -0.27
LIG1-215ENST00000597901 FAAHO00519 579 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 PMS2P2O95744 297 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 PLAUP00749 431 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 IL32P24001 234 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 EDNRAP25101 427 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 TACR3P29371 465 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 SLC1A3P43003 542 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 MRPL19P49406 292 aaKnown RBP13.36□□□□□ -0.27
LIG1-215ENST00000597901 POLR2HP52434 150 aaKnown RBP13.36□□□□□ -0.27
LIG1-215ENST00000597901 OR2B6P58173 313 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 EPS8Q12929 822 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 MRPL2Q5T653 305 aaKnown RBP13.36□□□□□ -0.27
LIG1-215ENST00000597901 SLC2A7Q6PXP3 512 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 Q6ZT83 130 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 FUNDC1Q8IVP5 155 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 ZHX1-C8orf76Q96EF9 292 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 USB1Q9BQ65 265 aaKnown RBP13.36□□□□□ -0.27
LIG1-215ENST00000597901 EBF4Q9BQW3 602 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 CCDC28BQ9BUN5 200 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 ADAM19Q9H013 955 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 PAIP1Q9H074 479 aaKnown RBP13.36□□□□□ -0.27
LIG1-215ENST00000597901 TCF7L2Q9NQB0 619 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 THUMPD1Q9NXG2 353 aaKnown RBP13.36□□□□□ -0.27
LIG1-215ENST00000597901 CALML5Q9NZT1 146 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 TMEM181Q9P2C4 612 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 P2RX2Q9UBL9 471 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 PRDM4Q9UKN5 801 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 ZNF232Q9UNY5 417 aa13.36□□□□□ -0.27
LIG1-215ENST00000597901 CELSR1Q9NYQ6 3014 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 IGKV3D-15A0A087WSY6 115 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 A0A0G2JPF8 293 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 TMEM72A0PK05 275 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 CDHR4A6H8M9 788 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 ZNF716A6NP11 495 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 HNRNPCL2B2RXH8 293 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 HNRNPCL3B7ZW38 293 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 CLIC1O00299 241 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 POLR3GO15318 223 aaPredicted RBP13.35□□□□□ -0.27
LIG1-215ENST00000597901 ZNF208O43345 1280 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 HNRNPCL1O60812 293 aaKnown RBP13.35□□□□□ -0.27
LIG1-215ENST00000597901 SMPD2O60906 423 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 GKN3PP0CG01 181 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 HNRNPCL4P0DMR1 293 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 FOSL1P15407 271 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 ACAA2P42765 397 aaKnown RBP13.35□□□□□ -0.27
LIG1-215ENST00000597901 MAP2K6P52564 334 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 CRISP3P54108 245 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 NR1H2P55055 460 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 STX1BP61266 288 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 RGNQ15493 299 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 TAB1Q15750 504 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 SHEQ5VZ18 495 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 BLOC1S3Q6QNY0 202 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 ZNF704Q6ZNC4 412 aaPredicted RBP13.35□□□□□ -0.27
LIG1-215ENST00000597901 C20orf204Q6ZNR8 217 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 BHLHA15Q7RTS1 189 aaPredicted RBP13.35□□□□□ -0.27
LIG1-215ENST00000597901 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.35□□□□□ -0.27
LIG1-215ENST00000597901 KRTAP1-3Q8IUG1 177 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 CCDC103Q8IW40 242 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 ZNF440Q8IYI8 595 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 ZNF100Q8IYN0 542 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 LRRC75A-AS1Q8N1F1 130 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 CLIP4Q8N3C7 705 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 KISS1RQ969F8 398 aaPredicted RBP13.35□□□□□ -0.27
LIG1-215ENST00000597901 DDIT4LQ96D03 193 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 TMEM204Q9BSN7 226 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 DLL4Q9NR61 685 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 HRNRQ86YZ3 2850 aaPredicted RBP13.35□□□□□ -0.27
LIG1-215ENST00000597901 DSPPQ9NZW4 1301 aa13.35□□□□□ -0.27
LIG1-215ENST00000597901 ITPR3Q14573 2671 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 C2CD3Q4AC94 2353 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 MED13LQ71F56 2210 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 ARHGEF9O43307 516 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 DNPH1O43598 174 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 BCHEP06276 602 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 NUDT7P0C024 238 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 IMPDH2P12268 514 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 UQCRBP14927 111 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 NTF4P34130 210 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 AQP5P55064 265 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 H3F3AP84243 136 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 LARS2Q15031 903 aaKnown RBP13.34□□□□□ -0.27
LIG1-215ENST00000597901 ABLIM2Q6H8Q1 611 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 ZNF836Q6ZNA1 936 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 HDXQ7Z353 690 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms