RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 RNF11Q9Y3C5 154 aa13.75□□□□□ -0.21
VPS53-218ENST00000575207 ARPC4-TTLL3A0A0A6YYG9 625 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 IGHV2OR16-5A0A0B4J2B6 119 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 GXYLT2A0PJZ3 443 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 TRIM49D1C9J1S8 452 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 CBFA2T2O43439 604 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 ESRRBO95718 433 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 KRT14P02533 472 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 HPGDP15428 266 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 GABRA3P34903 492 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 ALDH3B1P43353 468 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 SLC12A2P55011 1212 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 SNTB2Q13425 540 aaKnown RBP13.74□□□□□ -0.21
VPS53-218ENST00000575207 DAG1Q14118 895 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 DEFB112Q30KQ8 113 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 SLC25A53Q5H9E4 307 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 TRMT10BQ6PF06 316 aaKnown RBP13.74□□□□□ -0.21
VPS53-218ENST00000575207 CASP12Q6UXS9 341 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 Q6YL49 198 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 OR52E2Q8NGJ4 325 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 EXOSC8Q96B26 276 aaKnown RBP13.74□□□□□ -0.21
VPS53-218ENST00000575207 NAT9Q9BTE0 207 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 MRI1Q9BV20 369 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 MARCH7Q9H992 704 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 GIMAP4Q9NUV9 329 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 PARPBPQ9NWS1 579 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 C19orf53Q9UNZ5 99 aaPredicted RBP13.74□□□□□ -0.21
VPS53-218ENST00000575207 INSIG2Q9Y5U4 225 aa13.74□□□□□ -0.21
VPS53-218ENST00000575207 A0A1W2PQD3 144 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 TRAPPC2LH3BP13 241 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 BANF1O75531 89 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 PPIAL4GP0DN37 164 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 MPIP34949 423 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 CSNK2A1P68400 391 aaPredicted RBP13.73□□□□□ -0.21
VPS53-218ENST00000575207 CD226Q15762 336 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 TOMM34Q15785 309 aaPredicted RBP13.73□□□□□ -0.21
VPS53-218ENST00000575207 MYPOPQ86VE0 399 aaPredicted RBP13.73□□□□□ -0.21
VPS53-218ENST00000575207 NAT8LQ8N9F0 302 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 L3MBTL4Q8NA19 623 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 DYRK2Q92630 601 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 ZDHHC16Q969W1 377 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 RBMXL1Q96E39 390 aaKnown RBP13.73□□□□□ -0.21
VPS53-218ENST00000575207 SLC47A1Q96FL8 570 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 ZNF317Q96PQ6 595 aaPredicted RBP13.73□□□□□ -0.21
VPS53-218ENST00000575207 NOX4Q9NPH5 578 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.73□□□□□ -0.21
VPS53-218ENST00000575207 ACOT9Q9Y305 439 aa13.73□□□□□ -0.21
VPS53-218ENST00000575207 REXO2Q9Y3B8 237 aaKnown RBP13.73□□□□□ -0.21
VPS53-218ENST00000575207 SUPT3HB4E1H0 165 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 SULT2B1O00204 365 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 ETV2O00321 342 aaPredicted RBP13.72□□□□□ -0.21
VPS53-218ENST00000575207 CDC14BO60729 498 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 SUPT3HO75486 399 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 CELA3BP08861 270 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 ALOX5P09917 674 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 CRYBB2P43320 205 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 RNF144AP50876 292 aaPredicted RBP13.72□□□□□ -0.21
VPS53-218ENST00000575207 UBE2NP61088 152 aaKnown RBP13.72□□□□□ -0.21
VPS53-218ENST00000575207 TRA2BP62995 288 aaKnown RBP13.72□□□□□ -0.21
VPS53-218ENST00000575207 ZNF117Q03924 483 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 GALNT1Q10472 559 aaPredicted RBP13.72□□□□□ -0.21
VPS53-218ENST00000575207 TECRLQ5HYJ1 363 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 C3orf33Q6P1S2 294 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 PIGXQ8TBF5 258 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 PIK3R3Q92569 461 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 ZNF524Q96C55 264 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 GAL3ST1Q99999 423 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 DENND2DQ9H6A0 471 aaPredicted RBP13.72□□□□□ -0.21
VPS53-218ENST00000575207 NOX3Q9HBY0 568 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 POMT1Q9Y6A1 747 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 U3KQK5 164 aa13.72□□□□□ -0.21
VPS53-218ENST00000575207 IGHV3OR16-10A0A075B7F0 116 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 TTC36A6NLP5 189 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 UPK1AO00322 258 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 SCDO00767 359 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 IGHMP01871 453 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 NR4A1P22736 598 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 SUMO3P55854 103 aaPredicted RBP13.71□□□□□ -0.21
VPS53-218ENST00000575207 FRG2Q64ET8 278 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 CBLN3Q6UW01 205 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 TMEM107Q6UX40 140 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 GAS2L3Q86XJ1 694 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 IGDCC3Q8IVU1 814 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 ZSCAN4Q8NAM6 433 aaPredicted RBP13.71□□□□□ -0.21
VPS53-218ENST00000575207 OR1K1Q8NGR3 316 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 STAG3L4Q8TBR4 150 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 MAGEE2Q8TD90 523 aaPredicted RBP13.71□□□□□ -0.21
VPS53-218ENST00000575207 ST7LQ8TDW4 575 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 BCL2L2Q92843 193 aaPredicted RBP13.71□□□□□ -0.21
VPS53-218ENST00000575207 MARS2Q96GW9 593 aaKnown RBP13.71□□□□□ -0.21
VPS53-218ENST00000575207 FRG2BQ96QU4 278 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 C16orf95Q9H693 158 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 ALG9Q9H6U8 611 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 SLC35C2Q9NQQ7 365 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 UBQLN4Q9NRR5 601 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 SIRT3Q9NTG7 399 aaPredicted RBP13.71□□□□□ -0.21
VPS53-218ENST00000575207 DDX18Q9NVP1 670 aaKnown RBP13.71□□□□□ -0.21
VPS53-218ENST00000575207 TMEM45AQ9NWC5 275 aa13.71□□□□□ -0.21
VPS53-218ENST00000575207 CLDN25C9JDP6 229 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 UBXN8O00124 270 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms