RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PHF3Q92576 2039 aaKnown RBP18.55■□□□□ 0.56
VPS53-210ENST00000571456 H3BML4 177 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 AP3D1O14617 1153 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 ZNF208O43345 1280 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 STAMBPO95630 424 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 OPN1SWP03999 348 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 GKN3PP0CG01 181 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 ACVR2AP27037 513 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 CRYBA2P53672 197 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 KRTAP10-9P60411 292 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 MERTKQ12866 999 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 CHMP1BQ7LBR1 199 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 DOLPP1Q86YN1 238 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 GPR32P1Q8NGA4 272 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 UCN2Q96RP3 112 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 PCDHAC1Q9H158 963 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 SELENONQ9NZV5 590 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 CHRNA9Q9UGM1 479 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 CAMK2AQ9UQM7 478 aa18.54■□□□□ 0.56
VPS53-210ENST00000571456 TRGV8A0A0C4DH27 118 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 H0Y3Z8 333 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 ADAMDEC1O15204 470 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 ADAM11O75078 769 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 EPPINO95925 133 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 PNMTP11086 282 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 ZNF136P52737 540 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 CEACAM7Q14002 265 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 ZNF613Q6PF04 617 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 C5orf46Q6UWT4 87 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 MRGPRGQ86SM5 289 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 ULK2Q8IYT8 1036 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 LILRA2Q8N149 483 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 RNF148Q8N7C7 305 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 SLC7A6OSQ96CW6 309 aaPredicted RBP18.53■□□□□ 0.56
VPS53-210ENST00000571456 NSMCE2Q96MF7 247 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 CALHM2Q9HA72 323 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 TIGARQ9NQ88 270 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 PNPLA3Q9NST1 481 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 ACTR3BQ9P1U1 418 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 ARHGAP21Q5T5U3 1957 aa18.53■□□□□ 0.56
VPS53-210ENST00000571456 DNAJC8O75937 253 aaPredicted RBP18.52■□□□□ 0.56
VPS53-210ENST00000571456 HOXB6P17509 224 aaKnown RBP18.52■□□□□ 0.56
VPS53-210ENST00000571456 CXCR1P25024 350 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 IFNA8P32881 189 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 TRIM25Q14258 630 aaKnown RBP18.52■□□□□ 0.56
VPS53-210ENST00000571456 C3AR1Q16581 482 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 GLIPR1L2Q4G1C9 344 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 EMC4Q5J8M3 183 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 C1orf185Q5T7R7 199 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 ULK3Q6PHR2 472 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 CCDC121Q6ZUS5 278 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 LACC1Q8IV20 430 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 CADM2Q8N3J6 435 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 ZNF808Q8N4W9 903 aaPredicted RBP18.52■□□□□ 0.56
VPS53-210ENST00000571456 GEMIN6Q8WXD5 167 aaKnown RBP18.52■□□□□ 0.56
VPS53-210ENST00000571456 KLHL15Q96M94 604 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 DCAF13Q9NV06 445 aaKnown RBP18.52■□□□□ 0.56
VPS53-210ENST00000571456 EGFL7Q9UHF1 273 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 OSGIN1Q9UJX0 560 aa18.52■□□□□ 0.56
VPS53-210ENST00000571456 TMED7-TICAM2A0A0A6YYA0 188 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 CD8B2A6NJW9 211 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 SERPINA1P01009 418 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 PRG2P13727 222 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 TCN1P20061 433 aaPredicted RBP18.51■□□□□ 0.55
VPS53-210ENST00000571456 TCEA1P23193 301 aaKnown RBP18.51■□□□□ 0.55
VPS53-210ENST00000571456 TACR3P29371 465 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 IFI44LQ53G44 452 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 DCST1Q5T197 706 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 ZNF585AQ6P3V2 769 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 B3GNT6Q6ZMB0 384 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 OR5M1Q8NGP8 315 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 DDIT4LQ96D03 193 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 ASB9Q96DX5 294 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 SLC47A1Q96FL8 570 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 KLHDC3Q9BQ90 382 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 THTPAQ9BU02 230 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 RSPO3Q9BXY4 272 aaPredicted RBP18.51■□□□□ 0.55
VPS53-210ENST00000571456 MEMO1Q9Y316 297 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 SH3GLB1Q9Y371 365 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 TMED7Q9Y3B3 224 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 HDGFL3Q9Y3E1 203 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 ZNF175Q9Y473 711 aa18.51■□□□□ 0.55
VPS53-210ENST00000571456 ARPC2O15144 300 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 DNPH1O43598 174 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 ZNF682O95780 498 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 FCGR2AP12318 317 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 SLC7A1P30825 629 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 STARP49675 285 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 TRAP1Q12931 704 aaKnown RBP18.5■□□□□ 0.55
VPS53-210ENST00000571456 SYT14P1Q58G82 188 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 NSUN5P2Q63ZY6 315 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 ADGRE4PQ86SQ3 457 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 GGNQ86UU5 652 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 CARM1Q86X55 608 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 ADGRG3Q86Y34 549 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 OR6T1Q8NGN1 323 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 OR5M9Q8NGP3 310 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 MCUR1Q96AQ8 359 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 C3orf49Q96BT1 292 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 TPD52L3Q96J77 140 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms