RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 CGAP01215 116 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 NUDT7P0C024 238 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 POU2F1P14859 743 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 ENPP1P22413 925 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 SLC6A2P23975 617 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 CD79BP40259 229 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 CDK6Q00534 326 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 NFYCQ13952 458 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 DAZAP2Q15038 168 aaPredicted RBP11.97□□□□□ -0.49
CLK3-216ENST00000564468 RUNDC3AQ59EK9 446 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 RPS26P11Q5JNZ5 115 aaPredicted RBP11.97□□□□□ -0.49
CLK3-216ENST00000564468 DLEU7Q6UYE1 221 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 SPNS3Q6ZMD2 512 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 ZNF836Q6ZNA1 936 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 BEND4Q6ZU67 534 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 TMEM200AQ86VY9 491 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 ZZZ3Q8IYH5 903 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 BHLHE22Q8NFJ8 381 aaPredicted RBP11.97□□□□□ -0.49
CLK3-216ENST00000564468 ROBO4Q8WZ75 1007 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 MAL2Q969L2 176 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 ZNF524Q96C55 264 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 DDIT4LQ96D03 193 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 ANKRD27Q96NW4 1050 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 DACH2Q96NX9 599 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 ZNF607Q96SK3 696 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 CGREF1Q99674 301 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 SRXN1Q9BYN0 137 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 OPN3Q9H1Y3 402 aaPredicted RBP11.97□□□□□ -0.49
CLK3-216ENST00000564468 KLHL14Q9P2G3 628 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 NIPBLQ6KC79 2804 aaeCLIP11.97□□□□□ -0.49
CLK3-216ENST00000564468 SPG11Q96JI7 2443 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 TMED7-TICAM2A0A0A6YYA0 188 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 A0A1W2PNR3 127 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 PRORSD1PA6NEY8 169 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 CASKO14936 926 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 ZNF208O43345 1280 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 SERPINB7O75635 380 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 PMS2P2O95744 297 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 NPPAP01160 153 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 YES1P07947 543 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 DIO1P49895 249 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 PLAURQ03405 335 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 RBBP4Q09028 425 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 SNTB1Q13884 538 aaKnown RBP11.96□□□□□ -0.49
CLK3-216ENST00000564468 CYLC2Q14093 348 aaPredicted RBP11.96□□□□□ -0.49
CLK3-216ENST00000564468 MMEL1Q495T6 779 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 COQ5Q5HYK3 327 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 WBP2NLQ6ICG8 309 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 ADGRG3Q86Y34 549 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 ZNF610Q8N9Z0 462 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 HIPK4Q8NE63 616 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 NFKBIDQ8NI38 313 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 SH3GL1Q99961 368 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 CPPED1Q9BRF8 314 aaPredicted RBP11.96□□□□□ -0.49
CLK3-216ENST00000564468 EVA1AQ9H8M9 152 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 RLIMQ9NVW2 624 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 KLHL13Q9P2N7 655 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 CLEC4AQ9UMR7 237 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 EDARQ9UNE0 448 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 ANGPT4Q9Y264 503 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 TMED7Q9Y3B3 224 aa11.96□□□□□ -0.49
CLK3-216ENST00000564468 MED13LQ71F56 2210 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 NAV3Q8IVL0 2385 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 SH3D21A4FU49 640 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 A6NNC1 897 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 BBIP1A8MTZ0 92 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 C16orf97H3BN30 126 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 AP3D1O14617 1153 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 SLC22A2O15244 555 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 CYTIPO60759 359 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 ADAM11O75078 769 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 CXCR1P25024 350 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 TACR3P29371 465 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 AGTR1P30556 359 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 PRKAR1BP31321 381 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 ACAA2P42765 397 aaKnown RBP11.95□□□□□ -0.5
CLK3-216ENST00000564468 FAM27E3Q08E93 113 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 RASGEF1BQ0VAM2 473 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 SCARB2Q14108 478 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 CYP51A1Q16850 503 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 FBXW10Q5XX13 1052 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 ZNF474Q6S9Z5 364 aaPredicted RBP11.95□□□□□ -0.5
CLK3-216ENST00000564468 MTDHQ86UE4 582 aaKnown RBP11.95□□□□□ -0.5
CLK3-216ENST00000564468 SLC30A8Q8IWU4 369 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 CLIP4Q8N3C7 705 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 PCYOX1LQ8NBM8 494 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 C11orf65Q8NCR3 313 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 LINC01560Q8TB33 94 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 ABHD3Q8WU67 409 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 ADAM19Q9H013 955 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 SAR1AQ9NR31 198 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 KLHL28Q9NXS3 571 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 TMEM181Q9P2C4 612 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 OSGIN1Q9UJX0 560 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 SLC13A4Q9UKG4 626 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 TRAPPC4Q9Y296 219 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 AKAP6Q13023 2319 aa11.95□□□□□ -0.5
CLK3-216ENST00000564468 EIF1BO60739 113 aaKnown RBP11.94□□□□□ -0.5
CLK3-216ENST00000564468 CTAG2O75638 210 aa11.94□□□□□ -0.5
CLK3-216ENST00000564468 GKN3PP0CG01 181 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms