RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PDSS2Q86YH6 399 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 KLHDC8BQ8IXV7 354 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ZNF101Q8IZC7 436 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 CISD2Q8N5K1 135 aaKnown RBP8.5□□□□□ -1.05
VPS39-205ENST00000562258 AMER2Q8N7J2 671 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 ZNF611Q8N823 705 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 HMGCLL1Q8TB92 370 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 GPR119Q8TDV5 335 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 TMEM255BQ8WV15 326 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 LMF1Q96S06 567 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 LHPPQ9H008 270 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 EGLN3Q9H6Z9 239 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 BATF3Q9NR55 127 aa8.5□□□□□ -1.05
VPS39-205ENST00000562258 TLN1Q9Y490 2541 aaKnown RBP8.5□□□□□ -1.05
VPS39-205ENST00000562258 MNDAP41218 407 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 ARFIP1P53367 373 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 NR1H2P55055 460 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 SNU13P55769 128 aaKnown RBP8.49□□□□□ -1.05
VPS39-205ENST00000562258 SF3B4Q15427 424 aaKnown RBP eCLIP8.49□□□□□ -1.055e-6■■■■□ 20.8
VPS39-205ENST00000562258 TIGD6Q17RP2 521 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 KCTD18Q6PI47 426 aaPredicted RBP8.49□□□□□ -1.05
VPS39-205ENST00000562258 TRILQ7L0X0 811 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 NKAIN4Q8IVV8 208 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 KLHL36Q8N4N3 616 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 ZNF321PQ8N8H1 164 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 TMEM52Q8NDY8 209 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 ANKK1Q8NFD2 765 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 MUCL1Q96DR8 90 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 PGAM5Q96HS1 289 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 ZNF845Q96IR2 970 aaPredicted RBP8.49□□□□□ -1.05
VPS39-205ENST00000562258 TRIB1Q96RU8 372 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 CDH20Q9HBT6 801 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 HHATLQ9HCP6 504 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 C8orf4Q9NR00 106 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 CSPG4Q6UVK1 2322 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 SONP18583 2426 aaKnown RBP8.49□□□□□ -1.05
VPS39-205ENST00000562258 HCKP08631 526 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 EVI2BP34910 448 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 RAE1P78406 368 aaKnown RBP8.49□□□□□ -1.05
VPS39-205ENST00000562258 APOFQ13790 326 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 ZNF766Q5HY98 468 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 SLC25A25Q6KCM7 469 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 XKR5Q6UX68 686 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 SIMC1Q8NDZ2 872 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 C19orf18Q8NEA5 215 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 OR8J1Q8NGP2 316 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 THAP4Q8WY91 577 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 SLC41A2Q96JW4 573 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 B3GNT4Q9C0J1 378 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 RAB26Q9ULW5 256 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 ANKRD11Q6UB99 2663 aaPredicted RBP8.49□□□□□ -1.05
VPS39-205ENST00000562258 A0A1B0GVI7 797 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 IL2RAP01589 272 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 SERPINA7P05543 415 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 RCVRNP35243 200 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 RPL5P46777 297 aaKnown RBP8.49□□□□□ -1.05
VPS39-205ENST00000562258 ENTPD1P49961 510 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 CAPZA1P52907 286 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 ZSWIM7Q19AV6 140 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 ARMC4Q5T2S8 1044 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 ZNF836Q6ZNA1 936 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 PLCZ1Q86YW0 608 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 RNASE11Q8TAA1 199 aaKnown RBP8.49□□□□□ -1.05
VPS39-205ENST00000562258 NPRL2Q8WTW4 380 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 C10orf90Q96M02 699 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 ZC4H2Q9NQZ6 224 aa8.49□□□□□ -1.05
VPS39-205ENST00000562258 NADKO95544 446 aaPredicted RBP8.48□□□□□ -1.05
VPS39-205ENST00000562258 ADAP00813 363 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 POLR2HP52434 150 aaKnown RBP8.48□□□□□ -1.05
VPS39-205ENST00000562258 BIDP55957 195 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 NFATC3Q12968 1075 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 ECH1Q13011 328 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 MICAQ29983 383 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 ZNF791Q3KP31 576 aaPredicted RBP8.48□□□□□ -1.05
VPS39-205ENST00000562258 ARHGAP11AQ6P4F7 1023 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 HDDC2Q7Z4H3 204 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 ARHGAP22Q7Z5H3 698 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.48□□□□□ -1.05
VPS39-205ENST00000562258 ZBTB44Q8NCP5 570 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 FAR1Q8WVX9 515 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 EMC9Q9Y3B6 208 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 KCNE1BA0A087WTH5 132 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 SAGE2PA6NJ88 616 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 AIREO43918 545 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 OXSR1O95747 527 aaPredicted RBP8.48□□□□□ -1.05
VPS39-205ENST00000562258 LYNP07948 512 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 HTR1AP08908 422 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 CEACAM1P13688 526 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 ENPP1P22413 925 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 HTR3AP46098 478 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 SPATS1Q496A3 300 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 DCAF10Q5QP82 559 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 VASNQ6EMK4 673 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 PRSS42Q7Z5A4 293 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 UBE3DQ7Z6J8 389 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 MRGPREQ86SM8 312 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 EXTL1Q92935 676 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 MED20Q9H944 212 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 SNTG1Q9NSN8 517 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 MALT1Q9UDY8 824 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms