RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CPEP16870 476 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 ZNF12P17014 697 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 CD82P27701 267 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 GTF2E2P29084 291 aaKnown RBP6.89□□□□□ -1.31
VPS39-204ENST00000561818 CD40LGP29965 261 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 FOLR3P41439 243 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 NR0B1P51843 470 aaKnown RBP6.89□□□□□ -1.31
VPS39-204ENST00000561818 SLC25A1P53007 311 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 RPS4XP62701 263 aaKnown RBP6.89□□□□□ -1.31
VPS39-204ENST00000561818 ZNF45Q02386 682 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 GGTLC2Q14390 218 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 ANGPT1Q15389 498 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 CTF1Q16619 201 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 PERM1Q5SV97 790 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 FAM69AQ5T7M9 428 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 ZNF385CQ66K41 422 aaPredicted RBP6.89□□□□□ -1.31
VPS39-204ENST00000561818 FAAH2Q6GMR7 532 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 PWWP2BQ6NUJ5 590 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 MRPL14Q6P1L8 145 aaKnown RBP6.89□□□□□ -1.31
VPS39-204ENST00000561818 NIPAL3Q6P499 406 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 DNM1P34Q6PK57 102 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 COX15Q7KZN9 410 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 WDR53Q7Z5U6 358 aaPredicted RBP6.89□□□□□ -1.31
VPS39-204ENST00000561818 COMTD1Q86VU5 262 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 JAZF1Q86VZ6 243 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 C9orf40Q8IXQ3 194 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 CACTIN-AS1Q8N1I8 211 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 SYS1Q8N2H4 156 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 SCAIQ8N9R8 606 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 OR2Y1Q8NGV0 311 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 OR2T27Q8NH04 317 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 OR4C3Q8NH37 302 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 B4GALNT2Q8NHY0 566 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 GRHL3Q8TE85 626 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 TSLPQ969D9 159 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 TMIGD2Q96BF3 282 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 PPP1R14BQ96C90 147 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 DDIT4LQ96D03 193 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 RNFT2Q96EX2 444 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 DEPDC7Q96QD5 511 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 ADOQ96SZ5 270 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 MED18Q9BUE0 208 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 GTPBP2Q9BX10 602 aaKnown RBP6.89□□□□□ -1.31
VPS39-204ENST00000561818 DPH1Q9BZG8 443 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 ADAM19Q9H013 955 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 EGLN3Q9H6Z9 239 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 PTGES2Q9H7Z7 377 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 CPNE5Q9HCH3 593 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 ASB6Q9NWX5 421 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 DNAJC27Q9NZQ0 273 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 RABL2AQ9UBK7 228 aaPredicted RBP6.89□□□□□ -1.31
VPS39-204ENST00000561818 KCNE5Q9UJ90 142 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 RABL2BQ9UNT1 228 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 LHX6Q9UPM6 363 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 TMEM184BQ9Y519 407 aaPredicted RBP6.89□□□□□ -1.31
VPS39-204ENST00000561818 PCDHGA3Q9Y5H0 932 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 SCN3AQ9NY46 2000 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 GON4LQ3T8J9 2241 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 CABIN1Q9Y6J0 2220 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 KNL1Q8NG31 2342 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 NINQ8N4C6 2090 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ISPDA4D126 451 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 A6NIZ1 184 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ETV2O00321 342 aaPredicted RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 XKRYO14609 159 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 FRS3O43559 492 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 PTP4A3O75365 173 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 LYPD3O95274 346 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 AHSA1O95433 338 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 TXNDC12O95881 172 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 RENP00797 406 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 IGKV1D-16P01601 117 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 CD14P08571 375 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 GKN3PP0CG01 181 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 HSMCR30P0CW71 290 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ITPKBP27987 946 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 C21orf33P30042 268 aaPredicted RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 SDHAP31040 664 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 FGF9P31371 208 aaPredicted RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 PTGER1P34995 402 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 RPL4P36578 427 aaKnown RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 MASP1P48740 699 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 RNF144AP50876 292 aaPredicted RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 CCR4P51679 360 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ZNF41P51814 821 aaPredicted RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 NUDT6P53370 316 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 RAP1BP61224 184 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 RAP1AP62834 184 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 TPBGQ13641 420 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ATP1A4Q13733 1029 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ERV3-1Q14264 604 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 GALEQ14376 348 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 PON3Q15166 354 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 SMN1Q16637 294 aaKnown RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 ZNF404Q494X3 552 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 CCDC58Q4VC31 144 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 VWA2Q5GFL6 755 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 PLA2G2CQ5R387 149 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 C1orf189Q5VU69 101 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 TMEM236Q5W0B7 351 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms