RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	APH1A	Q96BI3	265 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	RADIL	Q96JH8	1075 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	TMEM204	Q9BSN7	226 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	NAA11	Q9BSU3	229 aa	Predicted RBP	12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	CCDC106	Q9BWC9	280 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	QRSL1	Q9H0R6	528 aa	Known RBP	12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	TMBIM4	Q9HC24	238 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	KCNE5	Q9UJ90	142 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	ZNF232	Q9UNY5	417 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	NOSIP	Q9Y314	301 aa	Known RBP	12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	FAM234B	A2RU67	622 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	CFAP73	A6NFT4	308 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	UBD	O15205	165 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	ADA	P00813	363 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	ALDOC	P09972	364 aa	Known RBP	12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	PAX1	P15863	534 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	GGT1	P19440	569 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	SLC1A3	P43003	542 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	NME5	P56597	212 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	RPS4X	P62701	263 aa	Known RBP	12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	PHC1	P78364	1004 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	SLC35A1	P78382	337 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	CHRNE	Q04844	493 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	TIMM23B	Q5SRD1	257 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	ABLIM2	Q6H8Q1	611 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	NUFIP2	Q7Z417	695 aa	Known RBP	12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	YTHDF3	Q7Z739	585 aa	Known RBP	12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	MIER2	Q8N344	545 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	FBXW5	Q969U6	566 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	TRMT61A	Q96FX7	289 aa	Known RBP	12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	MAEL	Q96JY0	434 aa	Known RBP	12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	HS3ST6	Q96QI5	342 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	KLHDC3	Q9BQ90	382 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	SDR39U1	Q9NRG7	319 aa	Predicted RBP	12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	TMEM181	Q9P2C4	612 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	SLC9A8	Q9Y2E8	581 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445	NF1	P21359	2839 aa		12.5	□□□□□ -0.41
TPM1-223	ENST00000560445		A0A096LPI6	279 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	IGHV3-15	A0A0B4J1V0	119 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	GOLGA8Q	A0A0J9YX86	632 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	GOLGA8O	A6NCC3	632 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	GOLGA8N	F8WBI6	632 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	MRPL33	O75394	65 aa	Known RBP	12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	TGDS	O95455	350 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	LOX	P28300	417 aa	Predicted RBP	12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	IDH2	P48735	452 aa	Known RBP	12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	PTH2R	P49190	550 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	SLC16A1	P53985	500 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	CASP9	P55211	416 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	TGFBR3	Q03167	851 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	FUT5	Q11128	374 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	PPA1	Q15181	289 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	TAB1	Q15750	504 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	MAPK14	Q16539	360 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	FBXW9	Q5XUX1	488 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	OR7E24	Q6IFN5	339 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	ALKBH2	Q6NS38	261 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	KLHL17	Q6TDP4	642 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	UBE2J2	Q8N2K1	259 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	GOLGA6L1	Q8N7Z2	621 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	AKAP1	Q92667	903 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	TLCD1	Q96CP7	247 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	PERP	Q96FX8	193 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	SLC38A1	Q9H2H9	487 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	WDR55	Q9H6Y2	383 aa	Predicted RBP	12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	CTPS2	Q9NRF8	586 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	MGAT4B	Q9UQ53	548 aa		12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	MAGED1	Q9Y5V3	778 aa	Predicted RBP	12.49	□□□□□ -0.41
TPM1-223	ENST00000560445	ROS1	P08922	2347 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	CENPVL1	A0A0U1RR11	272 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	POLR3G	O15318	223 aa	Predicted RBP	12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	CLOCK	O15516	846 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	DIAPH2	O60879	1101 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	THBS1	P07996	1170 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	COX5A	P20674	150 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	RPS4Y1	P22090	263 aa	Known RBP	12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	PAX7	P23759	505 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	CXCR1	P25024	350 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	CRAT	P43155	626 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	POLR2J	P52435	117 aa	Known RBP	12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	OR2B6	P58173	313 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	DSTN	P60981	165 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	STK11	Q15831	433 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	C6orf10	Q5SRN2	563 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	NCMAP	Q5T1S8	102 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	AGBL2	Q5U5Z8	902 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	PRAMEF8	Q5VWM4	474 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	PRAMEF7	Q5VXH5	474 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	TMEM108	Q6UXF1	575 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	CLEC9A	Q6UXN8	241 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	DEPDC4	Q8N2C3	294 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	ANKFN1	Q8N957	763 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	SLC35B4	Q969S0	331 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	COX4I2	Q96KJ9	171 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445		Q96MF0	132 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	ALG2	Q9H553	416 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	PIF1	Q9H611	641 aa		12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	ZNF701	Q9NV72	531 aa	Predicted RBP	12.48	□□□□□ -0.41
TPM1-223	ENST00000560445	TMEM45A	Q9NWC5	275 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms