RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 KRT73Q86Y46 540 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 ZZZ3Q8IYH5 903 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 GCNT2Q8N0V5 402 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 PGAM4Q8N0Y7 254 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 CLIP4Q8N3C7 705 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 ACBD4Q8NC06 268 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 C11orf65Q8NCR3 313 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 HIPK4Q8NE63 616 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 ZNF563Q8TA94 476 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 THTPAQ9BU02 230 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 SFXN3Q9BWM7 321 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 RSPO3Q9BXY4 272 aaPredicted RBP8.4□□□□□ -1.06
LDLR-211ENST00000560173 DCLRE1BQ9H816 532 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 COQ10BQ9H8M1 238 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 NANOGQ9H9S0 305 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 RNF122Q9H9V4 155 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 CHST11Q9NPF2 352 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 KCNJ16Q9NPI9 418 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 NPDC1Q9NQX5 325 aaPredicted RBP8.4□□□□□ -1.06
LDLR-211ENST00000560173 GID8Q9NWU2 228 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 PAQR5Q9NXK6 330 aaPredicted RBP8.4□□□□□ -1.06
LDLR-211ENST00000560173 ZNF629Q9UEG4 869 aaPredicted RBP8.4□□□□□ -1.06
LDLR-211ENST00000560173 ZNF232Q9UNY5 417 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 ANGPT4Q9Y264 503 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 A0A1W2PNV4 684 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 FRS3O43559 492 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 TNFSF13O75888 250 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 AQP8O94778 261 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 STAMBPO95630 424 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 CRHP06850 196 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 GKN3PP0CG01 181 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 PRG2P13727 222 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 UQCRBP14927 111 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 IGFBP2P18065 325 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 AQP1P29972 269 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 PCGF2P35227 344 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 OPRM1P35372 400 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 CPOXP36551 454 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 APOBEC1P41238 236 aaKnown RBP8.39□□□□□ -1.07
LDLR-211ENST00000560173 ACAA2P42765 397 aaKnown RBP8.39□□□□□ -1.07
LDLR-211ENST00000560173 SLC1A3P43003 542 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 HTR3AP46098 478 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 CPA2P48052 419 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 NUDT2P50583 147 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 AGFG1P52594 562 aaKnown RBP8.39□□□□□ -1.07
LDLR-211ENST00000560173 SGCBQ16585 318 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 TMEM176BQ3YBM2 270 aaPredicted RBP8.39□□□□□ -1.07
LDLR-211ENST00000560173 FBXL19-AS1Q494R0 122 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 PDSS1Q5T2R2 415 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 FBXW10Q5XX13 1052 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 ZNF550Q7Z398 422 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 P4HA3Q7Z4N8 544 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 COMTD1Q86VU5 262 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 ATP6V1C2Q8NEY4 427 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 OR10A6Q8NH74 314 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 SLC25A43Q8WUT9 341 aaPredicted RBP8.39□□□□□ -1.07
LDLR-211ENST00000560173 OSTF1Q92882 214 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 SLC35B4Q969S0 331 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 INTS12Q96CB8 462 aaKnown RBP8.39□□□□□ -1.07
LDLR-211ENST00000560173 ZNF607Q96SK3 696 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 SH3GL1Q99961 368 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 HOPXQ9BPY8 73 aaPredicted RBP8.39□□□□□ -1.07
LDLR-211ENST00000560173 GPATCH1Q9BRR8 931 aaKnown RBP8.39□□□□□ -1.07
LDLR-211ENST00000560173 SPATA5L1Q9BVQ7 753 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 SRXN1Q9BYN0 137 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 ARMC7Q9H6L4 198 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 CTPS2Q9NRF8 586 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 CHRNA9Q9UGM1 479 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 DCHS2Q6V1P9 2916 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 PDZD2O15018 2839 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 NF1P21359 2839 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 APCP25054 2843 aa8.39□□□□□ -1.07
LDLR-211ENST00000560173 POLQO75417 2590 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 CSMD2Q7Z408 3487 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 A0A1W2PNR3 127 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 PRORSD1PA6NEY8 169 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 AIM2O14862 343 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 TPST1O60507 370 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 FKBP6O75344 327 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 GCM2O75603 506 aaPredicted RBP8.38□□□□□ -1.07
LDLR-211ENST00000560173 SERPINB7O75635 380 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 SYNGR4O95473 234 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 TACR3P29371 465 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 SLC7A1P30825 629 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 ASCL1P50553 236 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 POLR2HP52434 150 aaKnown RBP8.38□□□□□ -1.07
LDLR-211ENST00000560173 CARD18P57730 90 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 GUSBP1Q15486 140 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 ZNF239Q16600 458 aaKnown RBP8.38□□□□□ -1.07
LDLR-211ENST00000560173 VMACQ2NL98 169 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 SYT14P1Q58G82 188 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 EEF1A1P5Q5VTE0 462 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 SP5Q6BEB4 398 aaPredicted RBP8.38□□□□□ -1.07
LDLR-211ENST00000560173 ARPINQ7Z6K5 226 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 LSRQ86X29 649 aaPredicted RBP8.38□□□□□ -1.07
LDLR-211ENST00000560173 ADGRG3Q86Y34 549 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 ARMC8Q8IUR7 673 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 SLC30A8Q8IWU4 369 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 DEFB107AQ8IZN7 70 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 UTP4Q969X6 686 aaKnown RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms