RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 ZNF440Q8IYI8 595 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 RAB3IL1Q8TBN0 382 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 CCDC115Q96NT0 180 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 KLHDC3Q9BQ90 382 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 RMND5AQ9H871 391 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 CTPS2Q9NRF8 586 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 THAP1Q9NVV9 213 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 ASB6Q9NWX5 421 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 TMEM181Q9P2C4 612 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 PRDM4Q9UKN5 801 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 ZNF232Q9UNY5 417 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 TRAPPC4Q9Y296 219 aa11.15□□□□□ -0.62
SNX1-209ENST00000559961 ZNF814B7Z6K7 855 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 RFXANKO14593 260 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 HDAC3O15379 428 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 DNAJA2O60884 412 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 ERLIN1O75477 346 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 IL6P05231 212 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 PGRP06401 933 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 DBIP07108 87 aaKnown RBP11.14□□□□□ -0.63
SNX1-209ENST00000559961 CXCR1P25024 350 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 PCSK6P29122 969 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 PGM1P36871 562 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 POLR2HP52434 150 aaKnown RBP11.14□□□□□ -0.63
SNX1-209ENST00000559961 CHRNEQ04844 493 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 BSPH1Q075Z2 132 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 FAPQ12884 760 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 ZSWIM7Q19AV6 140 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 ZNF672Q499Z4 452 aaPredicted RBP11.14□□□□□ -0.63
SNX1-209ENST00000559961 OGFOD2Q6N063 350 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 LRRC74BQ6ZQY2 392 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 WDR60Q8WVS4 1066 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 ADAD1Q96M93 576 aaKnown RBP11.14□□□□□ -0.63
SNX1-209ENST00000559961 SAP130Q9H0E3 1048 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 SERHL2Q9H4I8 314 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 PNPOQ9NVS9 261 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 THUMPD1Q9NXG2 353 aaKnown RBP11.14□□□□□ -0.63
SNX1-209ENST00000559961 CISD1Q9NZ45 108 aaKnown RBP11.14□□□□□ -0.63
SNX1-209ENST00000559961 PRSS50Q9UI38 385 aa11.14□□□□□ -0.63
SNX1-209ENST00000559961 TMED7-TICAM2A0A0A6YYA0 188 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 CFAP73A6NFT4 308 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 HMGN4O00479 90 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 KRT33AO76009 404 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 DHRS4L1P0CG22 281 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 KITP10721 976 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 IDO1P14902 403 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 NCF2P19878 526 aaPredicted RBP11.13□□□□□ -0.63
SNX1-209ENST00000559961 SLC1A3P43003 542 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 CDH11P55287 796 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 UFM1P61960 85 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 BST1Q10588 318 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 LARS2Q15031 903 aaKnown RBP11.13□□□□□ -0.63
SNX1-209ENST00000559961 MAPK14Q16539 360 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 GSTA3Q16772 222 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 SLC22A25Q6T423 547 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 KLHL24Q6TFL4 600 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 FRRS1Q6ZNA5 592 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 ABHD12BQ7Z5M8 362 aaPredicted RBP11.13□□□□□ -0.63
SNX1-209ENST00000559961 FBXL14Q8N1E6 418 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 CIARTQ8N365 385 aaPredicted RBP11.13□□□□□ -0.63
SNX1-209ENST00000559961 MGARPQ8TDB4 240 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 ZNF300Q96RE9 604 aaPredicted RBP11.13□□□□□ -0.63
SNX1-209ENST00000559961 SORT1Q99523 831 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 CCDC106Q9BWC9 280 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 TAPBPLQ9BX59 468 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 AIG1Q9NVV5 245 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 TAS2R16Q9NYV7 291 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 P2RX2Q9UBL9 471 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 KCNE5Q9UJ90 142 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 HAO1Q9UJM8 370 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 SLC9A8Q9Y2E8 581 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 TMED7Q9Y3B3 224 aa11.13□□□□□ -0.63
SNX1-209ENST00000559961 MAGED1Q9Y5V3 778 aaPredicted RBP11.13□□□□□ -0.63
SNX1-209ENST00000559961 IGKV3D-15A0A087WSY6 115 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 GOLGA8QA0A0J9YX86 632 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 GOLGA8OA6NCC3 632 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 OR5H1A6NKK0 313 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 GOLGA8NF8WBI6 632 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 ABCD4O14678 606 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 ZNF208O43345 1280 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 SCN2BO60939 215 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 SLC22A3O75751 556 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 RAD51DO75771 328 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 GPIP06744 558 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 NID1P14543 1247 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 PTAFRP25105 342 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 CRATP43155 626 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 SYPL1Q16563 259 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 NRF1Q16656 503 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 CASP12Q6UXS9 341 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 DNAJC14Q6Y2X3 702 aaPredicted RBP11.12□□□□□ -0.63
SNX1-209ENST00000559961 OLIG3Q7RTU3 272 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 ADGRG3Q86Y34 549 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 FAM71CQ8NEG0 241 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 C20orf27Q9GZN8 174 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 RAD21L1Q9H4I0 556 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 FKRPQ9H9S5 495 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 ZFHX3Q15911 3703 aa11.12□□□□□ -0.63
SNX1-209ENST00000559961 DPRXA6NFQ7 191 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 AGAP5A6NIR3 686 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms