RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 C1QL3Q5VWW1 255 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 TMEM211Q6ICI0 200 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 PGM2L1Q6PCE3 622 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 FGD2Q7Z6J4 655 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 YTHDF3Q7Z739 585 aaKnown RBP9.08□□□□□ -0.96
USP3-216ENST00000559873 ATG4DQ86TL0 474 aaPredicted RBP9.08□□□□□ -0.96
USP3-216ENST00000559873 COMTD1Q86VU5 262 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 LACC1Q8IV20 430 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 ATP6V1C2Q8NEY4 427 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 ADAMTS16Q8TE57 1224 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 PHF10Q8WUB8 498 aaKnown RBP9.08□□□□□ -0.96
USP3-216ENST00000559873 CPNE4Q96A23 557 aaPredicted RBP9.08□□□□□ -0.96
USP3-216ENST00000559873 ZHX1-C8orf76Q96EF9 292 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 MPP4Q96JB8 637 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 CLPTM1LQ96KA5 538 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 EPYCQ99645 322 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 VKORC1Q9BQB6 163 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 CADM1Q9BY67 442 aaKnown RBP9.08□□□□□ -0.96
USP3-216ENST00000559873 ADAM19Q9H013 955 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 TINAGQ9UJW2 476 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 HDGFL3Q9Y3E1 203 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 FAM32AQ9Y421 112 aaKnown RBP9.08□□□□□ -0.96
USP3-216ENST00000559873 ZNF175Q9Y473 711 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 HEATR5AQ86XA9 2040 aa9.08□□□□□ -0.96
USP3-216ENST00000559873 AQP12BA6NM10 295 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 A8MVM7 634 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 ADAMDEC1O15204 470 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 PRKD3O94806 890 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 WISP1O95388 367 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 SYNGR4O95473 234 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 FABP3P05413 133 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 ATP6V1B2P21281 511 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 GTF2E2P29084 291 aaKnown RBP9.07□□□□□ -0.96
USP3-216ENST00000559873 IDUAP35475 653 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 MSX2P35548 267 aaPredicted RBP9.07□□□□□ -0.96
USP3-216ENST00000559873 OR1E2P47887 323 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 UQCRFS1P47985 274 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 CLDN20P56880 219 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 ST3GAL3Q11203 375 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 NPTX1Q15818 432 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 EIF2S3LQ2VIR3 472 aaKnown RBP9.07□□□□□ -0.96
USP3-216ENST00000559873 TMEM176BQ3YBM2 270 aaPredicted RBP9.07□□□□□ -0.96
USP3-216ENST00000559873 FAM98BQ52LJ0 330 aaKnown RBP9.07□□□□□ -0.96
USP3-216ENST00000559873 C4orf17Q53FE4 359 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 HBMQ6B0K9 141 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 OR2A2Q6IF42 318 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 PPP4R4Q6NUP7 873 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 CYP2R1Q6VVX0 501 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 P4HA3Q7Z4N8 544 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 VTCN1Q7Z7D3 282 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 GGNQ86UU5 652 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 ADGRG3Q86Y34 549 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 DOLPP1Q86YN1 238 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 AQP12AQ8IXF9 295 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 OFCC1Q8IZS5 231 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 OR10D3Q8NH80 312 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 STK35Q8TDR2 534 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 SLC38A4Q969I6 547 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 RELTQ969Z4 430 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 PYURFQ96I23 114 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 RAB3IPQ96QF0 476 aaPredicted RBP9.07□□□□□ -0.96
USP3-216ENST00000559873 OR5B2Q96R09 309 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 TRIB1Q96RU8 372 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 TM9SF2Q99805 663 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 KLHDC3Q9BQ90 382 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 TAPBPLQ9BX59 468 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 PRRG4Q9BZD6 226 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 MAGIXQ9H6Y5 334 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 CALHM2Q9HA72 323 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 SLC5A6Q9Y289 635 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 V9GYQ6 96 aa9.07□□□□□ -0.96
USP3-216ENST00000559873 A0A087WUJ7 227 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 TMEM72A0PK05 275 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 CD8B2A6NJW9 211 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 SLC22A20A6NK97 555 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 CLCA1A8K7I4 914 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 TMEM229AB2RXF0 380 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 SULT2B1O00204 365 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 CCL21O00585 134 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 TNFSF11O14788 317 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 OR2T1O43869 369 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 WISP2O76076 250 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 PMS2P2O95744 297 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 GPIP06744 558 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 FREM3P0C091 2139 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 UMPSP11172 480 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 CCNA2P20248 432 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 TNFRSF1BP20333 461 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 SMSP52788 366 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 SUCLG1P53597 346 aaKnown RBP9.06□□□□□ -0.96
USP3-216ENST00000559873 CDH12P55289 794 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 CLDN15P56746 228 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 CARD18P57730 90 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 SLC35A1P78382 337 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 CHRNB3Q05901 458 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 MFSD13AQ14CX5 517 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 EMC4Q5J8M3 183 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 C1orf146Q5VVC0 180 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 NSUN5P2Q63ZY6 315 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 RPTNQ6XPR3 784 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms