RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 YRDCQ86U90 279 aaKnown RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 LCA5Q86VQ0 697 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 HPS6Q86YV9 775 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 CCDC71Q8IV32 467 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 SLC44A2Q8IWA5 706 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 CLECL1Q8IZS7 167 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 GBP7Q8N8V2 638 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 WDSUB1Q8N9V3 476 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ZFP62Q8NB50 900 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 NUBPLQ8TB37 319 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 FBXO30Q8TB52 745 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 SPPL2AQ8TCT8 520 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 SSC4DQ8WTU2 575 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ITLN2Q8WWU7 325 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.84□□□□□ -1.79
SPG11-211ENST00000558561 TM9SF4Q92544 642 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 TMBIM1Q969X1 311 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 EFHD2Q96C19 240 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 OMA1Q96E52 524 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ELP4Q96EB1 424 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 GIMAP5Q96F15 307 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 THOC1Q96FV9 657 aaKnown RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 TRMT61AQ96FX7 289 aaKnown RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 MARK4Q96L34 752 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 GPR137Q96N19 417 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 AMDHD1Q96NU7 426 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 SMC6Q96SB8 1091 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 TM2D2Q9BX73 214 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 RSPO3Q9BXY4 272 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 TTTY12Q9BZ98 90 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 NUF2Q9BZD4 464 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 NUAK2Q9H093 628 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 PPCSQ9HAB8 311 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 FOLH1BQ9HBA9 442 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 SLCO1B3Q9NPD5 702 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 PFDN4Q9NQP4 134 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 AGPAT4Q9NRZ5 378 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 PNPLA3Q9NST1 481 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ZNF446Q9NWS9 450 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 HPF1Q9NWY4 346 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 C1orf109Q9NX04 203 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 MARCOQ9UEW3 520 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 PLEKHB1Q9UF11 243 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 TEKT2Q9UIF3 430 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 UBE2J1Q9Y385 318 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 FREM1Q5H8C1 2179 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ASH1LQ9NR48 2969 aaKnown RBP3.84□□□□□ -1.8
SPG11-211ENST00000558561 NKX2-6A6NCS4 301 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 KLRC4-KLRK1H3BQV0 150 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 OVOL3O00110 214 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 SDHDO14521 159 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 ANKRD28O15084 1053 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 EFNA2O43921 213 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 SLC19A2O60779 497 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 BCAS1O75363 584 aaPredicted RBP3.83□□□□□ -1.8
SPG11-211ENST00000558561 TRAPPC6AO75865 159 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 TOXO94900 526 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 CPSF4O95639 269 aaKnown RBP3.83□□□□□ -1.8
SPG11-211ENST00000558561 HSPA4LO95757 839 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 C6orf47O95873 294 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 ATP1B1P05026 303 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 TPOP07202 933 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 DRD5P21918 477 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 MATN1P21941 496 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 PRPH2P23942 346 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 GABRA3P34903 492 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 IDUAP35475 653 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 MAP3K8P41279 467 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 CA7P43166 264 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 PPICP45877 212 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 RFX3P48380 749 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 ZNF84P51523 738 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 NUP107P57740 925 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 RPL15P61313 204 aaKnown RBP3.83□□□□□ -1.8
SPG11-211ENST00000558561 TRA2BP62995 288 aaKnown RBP3.83□□□□□ -1.8
SPG11-211ENST00000558561 AP2B1P63010 937 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 PLGLB1Q02325 96 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 PMPCAQ10713 525 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 FOXF2Q12947 444 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 HSPB3Q12988 150 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 STX3Q13277 289 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 CBFBQ13951 182 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 SLC10A1Q14973 349 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 DUSP5Q16690 384 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 IMPG1Q17R60 797 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 XKR7Q5GH72 579 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 CCNJQ5T5M9 372 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 OR4F3Q6IEY1 312 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 LRIG3Q6UXM1 1119 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 RTL4Q6ZR62 310 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 TRILQ7L0X0 811 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 PAGE2Q7Z2X7 111 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 YTHDF3Q7Z739 585 aaKnown RBP3.83□□□□□ -1.8
SPG11-211ENST00000558561 MARCH3Q86UD3 253 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 ANKRD46Q86W74 232 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 ZNF575Q86XF7 245 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 RIMKLAQ8IXN7 391 aa3.83□□□□□ -1.8
SPG11-211ENST00000558561 LRRC25Q8N386 305 aaPredicted RBP3.83□□□□□ -1.8
SPG11-211ENST00000558561 RIBC1Q8N443 379 aaPredicted RBP3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms