RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 PHC1P78364 1004 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 TP53BP2Q13625 1128 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 SWI5Q1ZZU3 235 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 MST1LQ2TV78 715 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 LSM12Q3MHD2 195 aaKnown RBP11.09□□□□□ -0.63
SHMT2-223ENST00000556689 SPDYE7PQ495Y7 208 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 IQCCQ4KMZ1 466 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 PDZK1Q5T2W1 519 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 ABLIM2Q6H8Q1 611 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 RNF165Q6ZSG1 346 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 RFLNBQ8N5W9 214 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 ZNF540Q8NDQ6 660 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 OR7A2PQ8NGA2 310 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 OR56A1Q8NGH5 318 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 PSMA8Q8TAA3 256 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 C3orf49Q96BT1 292 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 FBXO17Q96EF6 278 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 SDF2Q99470 211 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 GPATCH2Q9NW75 528 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 OXSMQ9NWU1 459 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 UPB1Q9UBR1 384 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 MALT1Q9UDY8 824 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 LGALS13Q9UHV8 139 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 TRAF6Q9Y4K3 522 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.09□□□□□ -0.632e-7■■■■■ 32.4
SHMT2-223ENST00000556689 IGHV4-61A0A0C4DH41 118 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 A0A1W2PPM1 405 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 HMGB1P1B2RPK0 211 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-223ENST00000556689 TCF21O43680 179 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 GLRA3O75311 464 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 PMS2P2O95744 297 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 CSTAP01040 98 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 PROCP04070 461 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 ITGA5P08648 1049 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 LAMP1P11279 417 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 CPA3P15088 417 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 FKBP2P26885 142 aaKnown RBP11.08□□□□□ -0.64
SHMT2-223ENST00000556689 HPCAL1P37235 193 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 RPL3P39023 403 aaKnown RBP11.08□□□□□ -0.64
SHMT2-223ENST00000556689 APOBEC1P41238 236 aaKnown RBP11.08□□□□□ -0.64
SHMT2-223ENST00000556689 FOXG1P55316 489 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-223ENST00000556689 TGFBR3Q03167 851 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 GPR68Q15743 365 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 ZNF141Q15928 474 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 CARTPTQ16568 116 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 CR1LQ2VPA4 569 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 CCDC153Q494R4 210 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 GALNTL6Q49A17 601 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 C1QTNF12Q5T7M4 302 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 CCDC103Q8IW40 242 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 C17orf78Q8N4C9 275 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 NATD1Q8N6N6 113 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 C1orf162Q8NEQ5 155 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-223ENST00000556689 OR52E4Q8NGH9 312 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 PIGXQ8TBF5 258 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 OR7D2Q96RA2 312 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 NMUR2Q9GZQ4 415 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 TUBB1Q9H4B7 451 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 MYOZ1Q9NP98 299 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-223ENST00000556689 SLC17A5Q9NRA2 495 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 PARPBPQ9NWS1 579 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 DCTN4Q9UJW0 460 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 AMDHD2Q9Y303 409 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 FIS1Q9Y3D6 152 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 HDGFL3Q9Y3E1 203 aa11.08□□□□□ -0.64
SHMT2-223ENST00000556689 SPIN1Q9Y657 262 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-223ENST00000556689 DUXAA6NLW8 204 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 TMEM114B3SHH9 223 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 PDLIM1O00151 329 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 ANKRD28O15084 1053 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 SCAMP2O15127 329 aaKnown RBP11.07□□□□□ -0.64
SHMT2-223ENST00000556689 UBTFL6P0CB48 400 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-223ENST00000556689 ZNF23P17027 643 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 MAGEA8P43361 318 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 CCT5P48643 541 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 CLK1P49759 484 aaKnown RBP11.07□□□□□ -0.64
SHMT2-223ENST00000556689 SLC16A1P53985 500 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 PRPS1P60891 318 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 SNRPD2P62316 118 aaKnown RBP11.07□□□□□ -0.64
SHMT2-223ENST00000556689 SKP2Q13309 424 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 C9orf135Q5VTT2 229 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 LIPMQ5VYY2 423 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 BHLHB9Q6PI77 547 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 EIF3MQ7L2H7 374 aaKnown RBP11.07□□□□□ -0.64
SHMT2-223ENST00000556689 HOMEZQ8IX15 550 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 CCDC63Q8NA47 563 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 OR5D16Q8NGK9 328 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 MZB1Q8WU39 189 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 MOAP1Q96BY2 351 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 ARL5BQ96KC2 179 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 SORCS2Q96PQ0 1159 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 PRPF18Q99633 342 aaKnown RBP11.07□□□□□ -0.64
SHMT2-223ENST00000556689 VRK1Q99986 396 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-223ENST00000556689 CTPS2Q9NRF8 586 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 ATAD3AQ9NVI7 634 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 KCNE5Q9UJ90 142 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 MOKQ9UQ07 419 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 DNAJC15Q9Y5T4 150 aa11.07□□□□□ -0.64
SHMT2-223ENST00000556689 ATP6V1G2-DDX39BF2Z307 99 aa11.06□□□□□ -0.64
SHMT2-223ENST00000556689 CFLARO15519 480 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms