RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 TFPTP0C1Z6 253 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 TFPIP10646 304 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 UQCRC1P31930 480 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 SFTPDP35247 375 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 APOBEC1P41238 236 aaKnown RBP7.5□□□□□ -1.21
PSEN1-209ENST00000553855 ASCL1P50553 236 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 CTBP2P56545 445 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 CLDN20P56880 219 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 NCALDP61601 193 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 GNGT1P63211 74 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 CDK6Q00534 326 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 RBBP4Q09028 425 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 FUT5Q11128 374 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 SKP2Q13309 424 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 SCARB2Q14108 478 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 PON3Q15166 354 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 NDUFAF6Q330K2 333 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 PAGE3Q5JUK9 113 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 INTS11Q5TA45 600 aaKnown RBP7.5□□□□□ -1.21
PSEN1-209ENST00000553855 REEP3Q6NUK4 255 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 OLIG3Q7RTU3 272 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 SPATA21Q7Z572 469 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 KIF18BQ86Y91 864 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 SLC30A8Q8IWU4 369 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 DPP10Q8N608 796 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 CNEP1R1Q8N9A8 125 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 C11orf65Q8NCR3 313 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 BHLHE22Q8NFJ8 381 aaPredicted RBP7.5□□□□□ -1.21
PSEN1-209ENST00000553855 TNIP2Q8NFZ5 429 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 SLC26A7Q8TE54 656 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 SLC25A43Q8WUT9 341 aaPredicted RBP7.5□□□□□ -1.21
PSEN1-209ENST00000553855 SLC38A5Q8WUX1 472 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 OSTF1Q92882 214 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 CPNE4Q96A23 557 aaPredicted RBP7.5□□□□□ -1.21
PSEN1-209ENST00000553855 INTS12Q96CB8 462 aaKnown RBP7.5□□□□□ -1.21
PSEN1-209ENST00000553855 CCDC140Q96MF4 163 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 CGREF1Q99674 301 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 TREX2Q9BQ50 279 aaPredicted RBP7.5□□□□□ -1.21
PSEN1-209ENST00000553855 ELAC2Q9BQ52 826 aaKnown RBP7.5□□□□□ -1.21
PSEN1-209ENST00000553855 UCK2Q9BZX2 261 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 PIGMQ9H3S5 423 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 TMEM185BQ9H7F4 350 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 SLC6A13Q9NSD5 602 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 SELENONQ9NZV5 590 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 VAPAQ9P0L0 249 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 RPS6KB2Q9UBS0 482 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 ZNF443Q9Y2A4 671 aaPredicted RBP7.5□□□□□ -1.21
PSEN1-209ENST00000553855 AP3M1Q9Y2T2 418 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 NINQ8N4C6 2090 aa7.5□□□□□ -1.21
PSEN1-209ENST00000553855 LOC100653049A0A140TA62 436 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 GMNCA6NCL1 334 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 NKX2-6A6NCS4 301 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 TNFSF11O14788 317 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 MRASO14807 208 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 CXCL13O43927 109 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 KRT34O76011 436 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 PGM3O95394 542 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 OPN1LWP04000 364 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 ETS2P15036 469 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 PRKCAP17252 672 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 CXCR1P25024 350 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 COL8A1P27658 744 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 HOXC12P31275 282 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 PGM1P36871 562 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 IDH2P48735 452 aaKnown RBP7.49□□□□□ -1.21
PSEN1-209ENST00000553855 MVDP53602 400 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 SESN3P58005 492 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 CSNK2A1P68400 391 aaPredicted RBP7.49□□□□□ -1.21
PSEN1-209ENST00000553855 KLF10Q13118 480 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 CAPRIN1Q14444 709 aaKnown RBP7.49□□□□□ -1.21
PSEN1-209ENST00000553855 MAPK14Q16539 360 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 TMEM44Q2T9K0 475 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 TRMT5Q32P41 509 aaKnown RBP7.49□□□□□ -1.21
PSEN1-209ENST00000553855 TMEM176BQ3YBM2 270 aaPredicted RBP7.49□□□□□ -1.21
PSEN1-209ENST00000553855 RUNDC3AQ59EK9 446 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 SLC25A53Q5H9E4 307 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 COQ5Q5HYK3 327 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 MRPL2Q5T653 305 aaKnown RBP7.49□□□□□ -1.21
PSEN1-209ENST00000553855 AP1ARQ63HQ0 302 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 MEX3BQ6ZN04 569 aaKnown RBP7.49□□□□□ -1.21
PSEN1-209ENST00000553855 GRINAQ7Z429 371 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 HMGN2P46Q86SG4 172 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 SNX32Q86XE0 403 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 CADM2Q8N3J6 435 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 C9orf106Q8NAJ2 232 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 HIPK4Q8NE63 616 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 OR10D3Q8NH80 312 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 NFKBIDQ8NI38 313 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 FBLIM1Q8WUP2 373 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 DDIT4LQ96D03 193 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 CMTM5Q96DZ9 223 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 ANKRD27Q96NW4 1050 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 OR5B2Q96R09 309 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 ECSITQ9BQ95 431 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 QRSL1Q9H0R6 528 aaKnown RBP7.49□□□□□ -1.21
PSEN1-209ENST00000553855 ZNF385DQ9H6B1 395 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 TMEM38AQ9H6F2 299 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 EVA1AQ9H8M9 152 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 BCL2L10Q9HD36 194 aa7.49□□□□□ -1.21
PSEN1-209ENST00000553855 SAR1AQ9NR31 198 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms