RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 IQCCQ4KMZ1 466 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 FAM98BQ52LJ0 330 aaKnown RBP19.1■□□□□ 0.65
VPS29-206ENST00000549578 GDF7Q7Z4P5 450 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 ZDHHC21Q8IVQ6 265 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 OR5M9Q8NGP3 310 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 WDYHV1Q96HA8 205 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 RSRC1Q96IZ7 334 aaKnown RBP19.1■□□□□ 0.65
VPS29-206ENST00000549578 ZNF300Q96RE9 604 aaPredicted RBP19.1■□□□□ 0.65
VPS29-206ENST00000549578 OR11A1Q9GZK7 315 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 MAGIXQ9H6Y5 334 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 RIMS3Q9UJD0 308 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 GTF3C1Q12789 2109 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 ELOA3DA6NLF2 546 aaPredicted RBP19.09■□□□□ 0.65
VPS29-206ENST00000549578 CHP2O43745 196 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 OR5F1O95221 314 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 ABOP16442 354 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 ZNF708P17019 499 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 SUCLG1P53597 346 aaKnown RBP19.09■□□□□ 0.65
VPS29-206ENST00000549578 KPNB1Q14974 876 aaKnown RBP19.09■□□□□ 0.65
VPS29-206ENST00000549578 ELOA3BQ3SY89 546 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 WDR88Q6ZMY6 472 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 GGNQ86UU5 652 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 ELOA3Q8NG57 546 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 POP5Q969H6 163 aaKnown RBP19.09■□□□□ 0.65
VPS29-206ENST00000549578 SLC38A4Q969I6 547 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 DNAJA3Q96EY1 480 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 POLR2J2Q9GZM3 115 aaKnown RBP19.09■□□□□ 0.65
VPS29-206ENST00000549578 POLR2J3Q9H1A7 115 aaKnown RBP19.09■□□□□ 0.65
VPS29-206ENST00000549578 PNPLA3Q9NST1 481 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 CAMK2AQ9UQM7 478 aa19.09■□□□□ 0.65
VPS29-206ENST00000549578 FAM32AQ9Y421 112 aaKnown RBP19.09■□□□□ 0.65
VPS29-206ENST00000549578 ZNF462Q96JM2 2506 aa19.08■□□□□ 0.65
VPS29-206ENST00000549578 ZC3H12DA2A288 527 aaKnown RBP19.08■□□□□ 0.64
VPS29-206ENST00000549578 PRSS23O95084 383 aa19.08■□□□□ 0.64
VPS29-206ENST00000549578 GPIP06744 558 aa19.08■□□□□ 0.64
VPS29-206ENST00000549578 TPOP07202 933 aa19.08■□□□□ 0.64
VPS29-206ENST00000549578 PNMTP11086 282 aa19.08■□□□□ 0.64
VPS29-206ENST00000549578 UMPSP11172 480 aa19.08■□□□□ 0.64
VPS29-206ENST00000549578 CLDN15P56746 228 aa19.08■□□□□ 0.64
VPS29-206ENST00000549578 C19orf57Q0VDD7 668 aa19.08■□□□□ 0.64
VPS29-206ENST00000549578 MRPL49Q13405 166 aaKnown RBP19.08■□□□□ 0.64
VPS29-206ENST00000549578 TMEM176BQ3YBM2 270 aaPredicted RBP19.08■□□□□ 0.64
VPS29-206ENST00000549578 SYT14P1Q58G82 188 aa19.08■□□□□ 0.64
VPS29-206ENST00000549578 SWT1Q5T5J6 900 aaKnown RBP19.08■□□□□ 0.64
VPS29-206ENST00000549578 WLSQ5T9L3 541 aa19.08■□□□□ 0.64
VPS29-206ENST00000549578 CYP4Z1Q86W10 505 aa19.08■□□□□ 0.64
VPS29-206ENST00000549578 C12orf10Q9HB07 376 aa19.08■□□□□ 0.64
VPS29-206ENST00000549578 SPIN1Q9Y657 262 aaPredicted RBP19.08■□□□□ 0.64
VPS29-206ENST00000549578 A0A087WUJ7 227 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 EIF1AYO14602 144 aaKnown RBP19.07■□□□□ 0.64
VPS29-206ENST00000549578 BCKDKO14874 412 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 SLC19A2O60779 497 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 RAP2AP10114 183 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 TFPIP10646 304 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 CPN1P15169 458 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 ITGA2P17301 1181 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 RHCEP18577 417 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 MAGEA2P43356 314 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 RBPJQ06330 500 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 BCL2A1Q16548 175 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 GXYLT1Q4G148 440 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 CD163Q86VB7 1156 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 P3H2Q8IVL5 708 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 OFCC1Q8IZS5 231 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 FAM57AQ8TBR7 257 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 SLC25A43Q8WUT9 341 aaPredicted RBP19.07■□□□□ 0.64
VPS29-206ENST00000549578 KLHL15Q96M94 604 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 FNDC11Q9BVV2 318 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 PRDM14Q9GZV8 571 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 ALKBH4Q9NXW9 302 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 STOML1Q9UBI4 398 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 ZNF835Q9Y2P0 537 aa19.07■□□□□ 0.64
VPS29-206ENST00000549578 A0A0J9YW62 118 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 A0A1W2PNR3 127 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 TNFSF11O14788 317 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 ZNF208O43345 1280 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 SLC7A1P30825 629 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 IFNA8P32881 189 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 ACTR3P61158 418 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 CTU2Q2VPK5 515 aaKnown RBP19.06■□□□□ 0.64
VPS29-206ENST00000549578 EMC4Q5J8M3 183 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 PIWIL3Q7Z3Z3 882 aaKnown RBP19.06■□□□□ 0.64
VPS29-206ENST00000549578 NKAIN4Q8IVV8 208 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 MEIOBQ8N635 442 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 SLCO4A1Q96BD0 722 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 ARL5BQ96KC2 179 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 OR5B2Q96R09 309 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 PIP5K1AQ99755 562 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 PRSS27Q9BQR3 290 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 CHID1Q9BWS9 393 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 DENND2DQ9H6A0 471 aaPredicted RBP19.06■□□□□ 0.64
VPS29-206ENST00000549578 MAN2C1Q9NTJ4 1040 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 MPDZO75970 2070 aa19.06■□□□□ 0.64
VPS29-206ENST00000549578 IGKV1D-42A0A075B6H8 117 aa19.05■□□□□ 0.64
VPS29-206ENST00000549578 GJE1A6NN92 205 aa19.05■□□□□ 0.64
VPS29-206ENST00000549578 H0Y3Z8 333 aa19.05■□□□□ 0.64
VPS29-206ENST00000549578 ST3GAL3Q11203 375 aa19.05■□□□□ 0.64
VPS29-206ENST00000549578 C1QL3Q5VWW1 255 aa19.05■□□□□ 0.64
VPS29-206ENST00000549578 ZNF585AQ6P3V2 769 aa19.05■□□□□ 0.64
VPS29-206ENST00000549578 LINC00114Q6XXX2 140 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms