RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 GPR45Q9Y5Y3 372 aa4.12□□□□□ -1.75
LIMS1-214ENST00000542845 PLCE1Q9P212 2302 aa4.12□□□□□ -1.75
LIMS1-214ENST00000542845 WNK1Q9H4A3 2382 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 IGHV3OR16-10A0A075B7F0 116 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 IGHV1-18A0A0C4DH31 117 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 GXYLT2A0PJZ3 443 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 GJE1A6NN92 205 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 GOLGA6L22H0YM25 854 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 UBXN8O00124 270 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 RGS14O43566 566 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 MRPL33O75394 65 aaKnown RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 WNT11O96014 354 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 HPXP02790 462 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 LPLP06858 475 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 RNASE1P07998 156 aaKnown RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 LTA4HP09960 611 aaKnown RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 HPGDP15428 266 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 NPR2P20594 1047 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 PSMA4P25789 261 aaKnown RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 GABRA3P34903 492 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 THBS4P35443 961 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 GATA4P43694 442 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ARFIP1P53367 373 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 SLC16A1P53985 500 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 PSMD4P55036 377 aaKnown RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 LOXL3P58215 753 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 PRPS1P60891 318 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 LMO4P61968 165 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 PRR5P85299 388 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 PSG6Q00889 435 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 FOXF1Q12946 379 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 TBX2Q13207 712 aaPredicted RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 MORF4L2Q15014 288 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 PDCD1Q15116 288 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ZNHIT3Q15649 155 aaPredicted RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 TAF9Q16594 264 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 BEAN1Q3B7T3 259 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 HIKESHIQ53FT3 197 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ARMCX4Q5H9R4 360 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 AVPI1Q5T686 147 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 LCE1DQ5T752 114 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ARMC3Q5W041 872 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 LIPJQ5W064 366 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 C11orf87Q6NUJ2 197 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 GALNT18Q6P9A2 607 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 RHOUQ7L0Q8 258 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 IGDCC3Q8IVU1 814 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 GSPT2Q8IYD1 628 aaKnown RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 CDK20Q8IZL9 346 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 RNF10Q8N5U6 811 aaKnown RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 NOA1Q8NC60 698 aaKnown RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 SLC16A11Q8NCK7 471 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ZBTB34Q8NCN2 500 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 OR7G2Q8NG99 324 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 RFWD2Q8NHY2 731 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 CKAP2Q8WWK9 683 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 PIK3R3Q92569 461 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ZNF75CPQ92670 426 aaPredicted RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 DVL3Q92997 716 aaPredicted RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ATP6V1E2Q96A05 226 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 TM4SF18Q96CE8 201 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 C1orf147Q96MC9 270 aaPredicted RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 MUS81Q96NY9 551 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 OR5B2Q96R09 309 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 SERPINI1Q99574 410 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 GPA33Q99795 319 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ELAC2Q9BQ52 826 aaKnown RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 TRIM5Q9C035 493 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 DERL2Q9GZP9 239 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 POFUT1Q9H488 388 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ALG9Q9H6U8 611 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ZNF665Q9H7R5 613 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 BCO1Q9HAY6 547 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 Q9N2J8 555 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 EQTNQ9NQ60 294 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ZNF275Q9NSD4 429 aaPredicted RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ZNF69Q9UC07 566 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 TESQ9UGI8 421 aaKnown RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 TAGLN3Q9UI15 199 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 KLHL21Q9UJP4 597 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 FBXO9Q9UK97 447 aaPredicted RBP4.11□□□□□ -1.75
LIMS1-214ENST00000542845 AMDHD2Q9Y303 409 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 PSAT1Q9Y617 370 aa4.11□□□□□ -1.75
LIMS1-214ENST00000542845 ARHGAP32A7KAX9 2087 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 OR6C65A6NJZ3 312 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 ZNF724A8MTY0 619 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 PIP5K1BO14986 540 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 GSC2O15499 205 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 CDC14BO60729 498 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 CYTIPO60759 359 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 PIAS1O75925 651 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 OXSR1O95747 527 aaPredicted RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 MBD3O95983 291 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 IGKV1D-16P01601 117 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 FGGP02679 453 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 JUNP05412 331 aaKnown RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 ITGA5P08648 1049 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 TFPIP10646 304 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 CD1DP15813 335 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 MPIP34949 423 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms