RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 DCTN4Q9UJW0 460 aa23.5■■□□□ 1.35
CHFR-218ENST00000540963 HDGFL3Q9Y3E1 203 aa23.5■■□□□ 1.35
CHFR-218ENST00000540963 ATP23Q9Y6H3 246 aa23.5■■□□□ 1.35
CHFR-218ENST00000540963 LOC100289279A0A1B0GTE1 492 aa23.49■■□□□ 1.35
CHFR-218ENST00000540963 DUXAA6NLW8 204 aa23.49■■□□□ 1.35
CHFR-218ENST00000540963 PDLIM1O00151 329 aa23.49■■□□□ 1.35
CHFR-218ENST00000540963 ANKRD28O15084 1053 aa23.49■■□□□ 1.35
CHFR-218ENST00000540963 LYPLA1O75608 230 aaPredicted RBP23.49■■□□□ 1.35
CHFR-218ENST00000540963 PGRP06401 933 aa23.49■■□□□ 1.35
CHFR-218ENST00000540963 ITGA5P08648 1049 aa23.49■■□□□ 1.35
CHFR-218ENST00000540963 NR4A2P43354 598 aa23.49■■□□□ 1.35
CHFR-218ENST00000540963 C4orf33Q8N1A6 199 aa23.49■■□□□ 1.35
CHFR-218ENST00000540963 COQ8BQ96D53 544 aa23.49■■□□□ 1.35
CHFR-218ENST00000540963 MSI2Q96DH6 328 aaKnown RBP23.49■■□□□ 1.35
CHFR-218ENST00000540963 SLC35F4A4IF30 521 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 STX11O75558 287 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 CSTAP01040 98 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 FGF4P08620 206 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 KRT4P19013 534 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 TGFBR3Q03167 851 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 SWI5Q1ZZU3 235 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 C10orf107Q8IVU9 208 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 WDR31Q8NA23 367 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 PPP3R2Q96LZ3 170 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 PRPF18Q99633 342 aaKnown RBP23.48■■□□□ 1.35
CHFR-218ENST00000540963 CCDC106Q9BWC9 280 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 GATA5Q9BWX5 397 aaPredicted RBP23.48■■□□□ 1.35
CHFR-218ENST00000540963 CHODLQ9H9P2 273 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 CHRNA9Q9UGM1 479 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 MID2Q9UJV3 735 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 FIS1Q9Y3D6 152 aa23.48■■□□□ 1.35
CHFR-218ENST00000540963 A0A1W2PR80 420 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 C6orf47O95873 294 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 TFPIP10646 304 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 NTF4P34130 210 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 GGTLC2Q14390 218 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 PCLAFQ15004 111 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 EIF3MQ7L2H7 374 aaKnown RBP23.47■■□□□ 1.35
CHFR-218ENST00000540963 CCDC63Q8NA47 563 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 PRR14Q9BWN1 585 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 SLC17A5Q9NRA2 495 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 PARPBPQ9NWS1 579 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 KCNE5Q9UJ90 142 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 TRAF6Q9Y4K3 522 aa23.47■■□□□ 1.35
CHFR-218ENST00000540963 LOC390937A0A1W2PQ73 354 aa23.46■■□□□ 1.35
CHFR-218ENST00000540963 CYP7B1O75881 506 aa23.46■■□□□ 1.35
CHFR-218ENST00000540963 GUSBP08236 651 aa23.46■■□□□ 1.35
CHFR-218ENST00000540963 APEHP13798 732 aaKnown RBP23.46■■□□□ 1.35
CHFR-218ENST00000540963 MAGEA8P43361 318 aa23.46■■□□□ 1.35
CHFR-218ENST00000540963 GPR68Q15743 365 aa23.46■■□□□ 1.35
CHFR-218ENST00000540963 DDIASQ8IXT1 998 aa23.46■■□□□ 1.35
CHFR-218ENST00000540963 ZNF540Q8NDQ6 660 aa23.46■■□□□ 1.35
CHFR-218ENST00000540963 TRAPPC4Q9Y296 219 aa23.46■■□□□ 1.35
CHFR-218ENST00000540963 COPEO14579 308 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 UGT2B17O75795 530 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 LY6HO94772 140 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 UBTFL6P0CB48 400 aaPredicted RBP23.45■■□□□ 1.34
CHFR-218ENST00000540963 H3F3AP84243 136 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 MST1LQ2TV78 715 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 ARHGAP11BQ3KRB8 267 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 UGT3A2Q3SY77 523 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 GRINAQ7Z429 371 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 FAM71CQ8NEG0 241 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 OR5D16Q8NGK9 328 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 TWIST2Q8WVJ9 160 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 BOD1Q96IK1 185 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 C1QTNF6Q9BXI9 259 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 BHLHE41Q9C0J9 482 aaPredicted RBP23.45■■□□□ 1.34
CHFR-218ENST00000540963 ZNF350Q9GZX5 532 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 SLC35A3Q9Y2D2 325 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 SLC9A8Q9Y2E8 581 aa23.45■■□□□ 1.34
CHFR-218ENST00000540963 FOXG1P55316 489 aaPredicted RBP23.44■■□□□ 1.34
CHFR-218ENST00000540963 AP1ARQ63HQ0 302 aa23.44■■□□□ 1.34
CHFR-218ENST00000540963 IL17RELQ6ZVW7 336 aa23.44■■□□□ 1.34
CHFR-218ENST00000540963 RFLNBQ8N5W9 214 aa23.44■■□□□ 1.34
CHFR-218ENST00000540963 OR52E4Q8NGH9 312 aa23.44■■□□□ 1.34
CHFR-218ENST00000540963 TRIM44Q96DX7 344 aaPredicted RBP23.44■■□□□ 1.34
CHFR-218ENST00000540963 ARL5BQ96KC2 179 aa23.44■■□□□ 1.34
CHFR-218ENST00000540963 PPCSQ9HAB8 311 aa23.44■■□□□ 1.34
CHFR-218ENST00000540963 EML4Q9HC35 981 aaKnown RBP23.44■■□□□ 1.34
CHFR-218ENST00000540963 UPB1Q9UBR1 384 aa23.44■■□□□ 1.34
CHFR-218ENST00000540963 FCMRO60667 390 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 EIF1BO60739 113 aaKnown RBP23.43■■□□□ 1.34
CHFR-218ENST00000540963 TRIM13O60858 407 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 WNT11O96014 354 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 PRPS1L1P21108 318 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 MATN1P21941 496 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 PAX7P23759 505 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 PGM1P36871 562 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 PRPS1P60891 318 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 SNRPD2P62316 118 aaKnown RBP23.43■■□□□ 1.34
CHFR-218ENST00000540963 VSNL1P62760 191 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 SRSF2Q01130 221 aaKnown RBP23.43■■□□□ 1.34
CHFR-218ENST00000540963 PTGR1Q14914 329 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 CASP12Q6UXS9 341 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 SORCS2Q96PQ0 1159 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 CTPS2Q9NRF8 586 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 POLE3Q9NRF9 147 aa23.43■■□□□ 1.34
CHFR-218ENST00000540963 ATP6V1G2-DDX39BF2Z307 99 aa23.42■■□□□ 1.34
CHFR-218ENST00000540963 PIP5K1BO14986 540 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms