RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PMP2P02689 132 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 CLEC3BP05452 202 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 PSMB10P40306 273 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 HCAR3P49019 387 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 SEMA3BQ13214 749 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 HABP2Q14520 560 aaPredicted RBP8.22□□□□□ -1.09
YBX3-208ENST00000540447 ZNF789Q5FWF6 425 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 PRAMEF19Q5SWL8 479 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 TMEM65Q6PI78 240 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 TMEM182Q6ZP80 229 aaPredicted RBP8.22□□□□□ -1.09
YBX3-208ENST00000540447 PRSS45Q7RTY3 260 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 NAXDQ8IW45 347 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 OR2G3Q8NGZ4 309 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 MIB2Q96AX9 1013 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 SYT17Q9BSW7 474 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 ZNF442Q9H7R0 627 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 QTRT2Q9H974 415 aaKnown RBP8.22□□□□□ -1.09
YBX3-208ENST00000540447 MMP26Q9NRE1 261 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 ANKRD61A6NGH8 418 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 CD300LBA8K4G0 201 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 MPIG6BO95866 241 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 CD37P11049 281 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 GRM5P41594 1212 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 PDX1P52945 283 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 NHLH2Q02577 135 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 OR4D1Q15615 310 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 CBLL1Q75N03 491 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 TRAPPC6BQ86SZ2 158 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 MMP24Q9Y5R2 645 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 GPR45Q9Y5Y3 372 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 A0A1B0GUH1 482 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 XKRY2A2RUG3 117 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 GRXCR1A8MXD5 290 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 KCNK5O95279 499 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 RPLP2P05387 115 aaKnown RBP8.22□□□□□ -1.09
YBX3-208ENST00000540447 TACR2P21452 398 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 CDKN1CP49918 316 aaPredicted RBP8.22□□□□□ -1.09
YBX3-208ENST00000540447 CASP6P55212 293 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 GRB2P62993 217 aaKnown RBP8.22□□□□□ -1.09
YBX3-208ENST00000540447 SQSTM1Q13501 440 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 COL5A1-AS1Q5SY13 56 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 BTNL8Q6UX41 500 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 Q6ZN92 141 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 CATSPERGQ6ZRH7 1159 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 OR52B6Q8NGF0 335 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 HAVCR2Q8TDQ0 301 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 CDS1Q92903 461 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 TSGA13Q96PP4 275 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 SLC35D1Q9NTN3 355 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 ZDHHC3Q9NYG2 299 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 CNIH4Q9P003 139 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 KLF15Q9UIH9 416 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 NFAT5O94916 1531 aa8.22□□□□□ -1.09
YBX3-208ENST00000540447 ABCD3P28288 659 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 FCER1GP30273 86 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 MLF1P58340 268 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 CTF1Q16619 201 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 PRAMEF14Q5SWL7 426 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 OGFOD3Q6PK18 319 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 FBXW12Q6X9E4 464 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 ZNF66Q6ZN08 573 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 CMTM1Q8IZ96 169 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 OR8J2Q8NGG1 315 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 OR51L1Q8NGJ5 315 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 OR13D1Q8NGV5 346 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 ZMYND19Q96E35 227 aaPredicted RBP8.21□□□□□ -1.09
YBX3-208ENST00000540447 TMEM19Q96HH6 336 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 ZNF552Q9H707 407 aaPredicted RBP8.21□□□□□ -1.09
YBX3-208ENST00000540447 UCK1Q9HA47 277 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 CTSFQ9UBX1 484 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 NID2Q14112 1375 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 CPS1P31327 1500 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 LMTK2Q8IWU2 1503 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 TMEM218A2RU14 115 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 GPR31O00270 319 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 ADRA2BP18089 450 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 TIA1P31483 386 aaKnown RBP eCLIP8.21□□□□□ -1.094e-8■■■■■ 30.5
YBX3-208ENST00000540447 CDKN2DP55273 166 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 RPS26P62854 115 aaKnown RBP8.21□□□□□ -1.09
YBX3-208ENST00000540447 ZNF273Q14593 569 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 SOWAHAQ2M3V2 549 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 ZNF528Q3MIS6 628 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 EXOSC6Q5RKV6 272 aaKnown RBP8.21□□□□□ -1.09
YBX3-208ENST00000540447 HENMT1Q5T8I9 393 aaKnown RBP8.21□□□□□ -1.09
YBX3-208ENST00000540447 ZNF836Q6ZNA1 936 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 TRAM1L1Q8N609 369 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 HOXB13Q92826 284 aaPredicted RBP8.21□□□□□ -1.09
YBX3-208ENST00000540447 CXorf58Q96LI9 332 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 PCED1AQ9H1Q7 454 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 TLR9Q9NR96 1032 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 IGSF5Q9NSI5 407 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 PCDHB10Q9UN67 800 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 TRAPPC4Q9Y296 219 aa8.21□□□□□ -1.09
YBX3-208ENST00000540447 GJE1A6NN92 205 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 SNRPGP15A8MWD9 76 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 C8orf89P0DMQ9 161 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 CCKARP32238 428 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 STK19P49842 368 aaPredicted RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 TOMM34Q15785 309 aaPredicted RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 C6orf120Q7Z4R8 191 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms