RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SNRPGP62308 76 aaKnown RBP10.92□□□□□ -0.66
CLIP1-208ENST00000537004 SRSF1Q07955 248 aaKnown RBP eCLIP10.92□□□□□ -0.66
CLIP1-208ENST00000537004 ZNF267Q14586 743 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-208ENST00000537004 SYT6Q5T7P8 510 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-208ENST00000537004 SLC16A12Q6ZSM3 486 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 RRM2BQ7LG56 351 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 GDF7Q7Z4P5 450 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 ZAR1Q86SH2 424 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 RANBP3LQ86VV4 465 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-208ENST00000537004 MEX3DQ86XN8 651 aaKnown RBP10.92□□□□□ -0.66
CLIP1-208ENST00000537004 NKAIN4Q8IVV8 208 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 OR1N1Q8NGS0 311 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 SLC41A3Q96GZ6 507 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 VSTM2LQ96N03 204 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 IL4I1Q96RQ9 567 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 TIMMDC1Q9NPL8 285 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 CLN6Q9NWW5 311 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 SELENONQ9NZV5 590 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 DOPEY2Q9Y3R5 2298 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 NBPF19A0A087WUL8 3843 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 PRAMEF2O60811 474 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 PSMB9P28065 219 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 RFX3P48380 749 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 RNF144AP50876 292 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-208ENST00000537004 ST3GAL4Q11206 333 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 ZNF169Q14929 603 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-208ENST00000537004 DECR1Q16698 335 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 FLYWCH1Q4VC44 716 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 ACER2Q5QJU3 275 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 BEST3Q8N1M1 668 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 IQCF1Q8N6M8 205 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 B3GNT7Q8NFL0 401 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 PIGXQ8TBF5 258 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 GNPDA2Q8TDQ7 276 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 ACOT11Q8WXI4 607 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-208ENST00000537004 CNPPD1Q9BV87 410 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 PNO1Q9NRX1 252 aaKnown RBP10.91□□□□□ -0.66
CLIP1-208ENST00000537004 ENPP5Q9UJA9 477 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 SLC7A7Q9UM01 511 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 DTX4Q9Y2E6 619 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 IFNA16P05015 189 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 LCKP06239 509 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 GKN3PP0CG01 181 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 PRG2P13727 222 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 TNFSF10P50591 281 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 TBCEQ15813 527 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-208ENST00000537004 EXT1Q16394 746 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 EIF2S3LQ2VIR3 472 aaKnown RBP10.91□□□□□ -0.66
CLIP1-208ENST00000537004 ABHD17BQ5VST6 288 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 UBE2UQ5VVX9 321 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 KIF18BQ86Y91 864 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 ANKRD13BQ86YJ7 626 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 STX19Q8N4C7 294 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 TOR1AIP2Q8NFQ8 470 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 OR4N2Q8NGD1 307 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 OR8J1Q8NGP2 316 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 M1APQ8TC57 530 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 THAP3Q8WTV1 239 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-208ENST00000537004 TMEM255BQ8WV15 326 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 TRUB1Q8WWH5 349 aaKnown RBP10.91□□□□□ -0.66
CLIP1-208ENST00000537004 FCGR1BQ92637 280 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 HAS2Q92819 552 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 FAM46AQ96IP4 442 aaKnown RBP10.91□□□□□ -0.66
CLIP1-208ENST00000537004 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.91□□□□□ -0.66
CLIP1-208ENST00000537004 ARMC7Q9H6L4 198 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 MMP25Q9NPA2 562 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 CNIH4Q9P003 139 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 ERVK-19Q9WJR5 959 aa10.91□□□□□ -0.66
CLIP1-208ENST00000537004 ESPL1Q14674 2120 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 EFCAB10A6NFE3 127 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 ENTPD6O75354 484 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 IGKV1D-16P01601 117 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 STSP08842 583 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 HTR2AP28223 471 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 OMPP47874 163 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 GIPRP48546 466 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 FUT7Q11130 342 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 TSPAN31Q12999 210 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 SERTAD2Q14140 314 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 GINS1Q14691 196 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 TMEM201Q5SNT2 666 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 ZNF468Q5VIY5 522 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-208ENST00000537004 NPSR1Q6W5P4 371 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 ATCAYQ86WG3 371 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 NRMQ8IXM6 262 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 TCEANCQ8N8B7 351 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 NFAM1Q8NET5 270 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-208ENST00000537004 ELP5Q8TE02 316 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 Q96MT0 163 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 PELOQ9BRX2 385 aaKnown RBP10.9□□□□□ -0.66
CLIP1-208ENST00000537004 PLA2G12AQ9BZM1 189 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 POLR2J2Q9GZM3 115 aaKnown RBP10.9□□□□□ -0.66
CLIP1-208ENST00000537004 EGLN3Q9H6Z9 239 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 HIVEP3Q5T1R4 2406 aa10.9□□□□□ -0.66
CLIP1-208ENST00000537004 POLEQ07864 2286 aa10.9□□□□□ -0.67
CLIP1-208ENST00000537004 TRAPPC13A5PLN9 417 aa10.89□□□□□ -0.67
CLIP1-208ENST00000537004 SAGE2PA6NJ88 616 aa10.89□□□□□ -0.67
CLIP1-208ENST00000537004 BCAS1O75363 584 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-208ENST00000537004 GUSBP08236 651 aa10.89□□□□□ -0.67
CLIP1-208ENST00000537004 NR4A1P22736 598 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms