RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 RABL2BQ9UNT1 228 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 A0A0A6YYC8 382 aaPredicted RBP12.12□□□□□ -0.47
LDLR-203ENST00000535915 I3L1I5 382 aaPredicted RBP12.12□□□□□ -0.47
LDLR-203ENST00000535915 HRKO00198 91 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 S1PR1P21453 382 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 HLA-DMAP28067 261 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 PYCR1P32322 319 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 RBM34P42696 430 aaKnown RBP12.12□□□□□ -0.47
LDLR-203ENST00000535915 SNAP47Q5SQN1 464 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 SAMD12Q8N8I0 201 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 FAM98AQ8NCA5 519 aaKnown RBP12.12□□□□□ -0.47
LDLR-203ENST00000535915 OR52E2Q8NGJ4 325 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 OR5M3Q8NGP4 307 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 HOXB13Q92826 284 aaPredicted RBP12.12□□□□□ -0.47
LDLR-203ENST00000535915 KCNJ15Q99712 375 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 ZNF426Q9BUY5 554 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 SEMA6CQ9H3T2 930 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 EVA1AQ9H8M9 152 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 RPS6KB2Q9UBS0 482 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 RASD1Q9Y272 281 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 BOLA1Q9Y3E2 137 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 ALG5Q9Y673 324 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 SOX30O94993 753 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 IGHV4-34P06331 123 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 CD53P19397 219 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 HCCSP53701 268 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 P2RX3P56373 397 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 ACTC1P68032 377 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 ACTA1P68133 377 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 EIF2B5Q13144 721 aaKnown RBP12.11□□□□□ -0.47
LDLR-203ENST00000535915 FAM53BQ14153 422 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 CDK10Q15131 360 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 NNATQ16517 81 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 SFXN4Q6P4A7 337 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 SSX6Q7RTT6 188 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 NOXA1Q86UR1 476 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 ELMOD2Q8IZ81 293 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 SLC38A6Q8IZM9 456 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 SDR9C7Q8NEX9 313 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 OR5J2Q8NH18 312 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 PEX11GQ96HA9 241 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.11□□□□□ -0.47
LDLR-203ENST00000535915 PAQR5Q9NXK6 330 aaPredicted RBP12.11□□□□□ -0.47
LDLR-203ENST00000535915 HAO2Q9NYQ3 351 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 DTX4Q9Y2E6 619 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 COL4A2P08572 1712 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 TMEM131Q92545 1883 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 THADAQ6YHU6 1953 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 EIF4EP06730 217 aaKnown RBP12.11□□□□□ -0.47
LDLR-203ENST00000535915 UBL4AP11441 157 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 FHL1Q13642 323 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 ULK3Q6PHR2 472 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 TRILQ7L0X0 811 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 LSMEM1Q8N8F7 131 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 AVL9Q8NBF6 648 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 OR4M1Q8NGD0 313 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 OR4K13Q8NH42 304 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 UPRTQ96BW1 309 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 KCTD12Q96CX2 325 aaKnown RBP12.11□□□□□ -0.47
LDLR-203ENST00000535915 ZMYND19Q96E35 227 aaPredicted RBP12.11□□□□□ -0.47
LDLR-203ENST00000535915 UBL7Q96S82 380 aaPredicted RBP12.11□□□□□ -0.47
LDLR-203ENST00000535915 GAS2L1Q99501 681 aaPredicted RBP12.11□□□□□ -0.47
LDLR-203ENST00000535915 TMEM246Q9BRR3 403 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 CYSLTR2Q9NS75 346 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 CD207Q9UJ71 328 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 POMT2Q9UKY4 750 aa12.11□□□□□ -0.47
LDLR-203ENST00000535915 A0A1B0GVC2 190 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 A6NIN4 97 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 B4DGG1 531 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 TGFBR3LH3BV60 316 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 YES1P07947 543 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 THEGLP0DJG4 465 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 ALAS2P22557 587 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 THBS2P35442 1172 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 POU4F2Q12837 409 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 ACSM3Q53FZ2 586 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 KIRREL2Q6UWL6 708 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 ZNF550Q7Z398 422 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 TPRA1Q86W33 373 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 ARL14Q8N4G2 192 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 RFLNBQ8N5W9 214 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 C19orf47Q8N9M1 422 aaKnown RBP12.1□□□□□ -0.47
LDLR-203ENST00000535915 OR51L1Q8NGJ5 315 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 SLC2A12Q8TD20 617 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 GHSRQ92847 366 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 TRIM63Q969Q1 353 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 SPACA7Q96KW9 195 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 PGLYRP3Q96LB9 341 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 VSTM2LQ96N03 204 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 SMAD5Q99717 465 aaKnown RBP12.1□□□□□ -0.47
LDLR-203ENST00000535915 SPTY2D1-AS1A0A0U1RR47 76 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 A0A1W2PRG6 482 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 FAM157BP0CG42 384 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 RNH1P13489 461 aaKnown RBP12.1□□□□□ -0.47
LDLR-203ENST00000535915 HIST1H1CP16403 213 aaKnown RBP12.1□□□□□ -0.47
LDLR-203ENST00000535915 CLDN20P56880 219 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 ERV3-1Q14264 604 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 FGFBP1Q14512 234 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 ZNF267Q14586 743 aaPredicted RBP12.1□□□□□ -0.47
LDLR-203ENST00000535915 NDUFAF6Q330K2 333 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms