RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 HDGFL3Q9Y3E1 203 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 V9GYY5 206 aaPredicted RBP13.03□□□□□ -0.32
VPS28-215ENST00000531924 HIVEP2P31629 2446 aa13.03□□□□□ -0.32
VPS28-215ENST00000531924 CCDC154A6NI56 674 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 OR5H1A6NKK0 313 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 OVOL3O00110 214 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 ABCD4O14678 606 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 DNPH1O43598 174 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 RAD51DO75771 328 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 PMS2P2O95744 297 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 DANCRP0C864 163 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 CHRNEQ04844 493 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 DMTNQ08495 405 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 CASP8Q14790 479 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 HHATQ5VTY9 493 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 AGAP6Q5VW22 663 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 TMEM108Q6UXF1 575 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 FRRS1Q6ZNA5 592 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 ZNF621Q6ZSS3 439 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 RNF130Q86XS8 419 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 LRRC34Q8IZ02 419 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 PIAS4Q8N2W9 510 aaPredicted RBP13.02□□□□□ -0.33
VPS28-215ENST00000531924 MREGQ8N565 214 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 FAM71CQ8NEG0 241 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 OR52N5Q8NH56 324 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 ZNF75CPQ92670 426 aaPredicted RBP13.02□□□□□ -0.33
VPS28-215ENST00000531924 PMM1Q92871 262 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 DDIT4LQ96D03 193 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 NAA11Q9BSU3 229 aaPredicted RBP13.02□□□□□ -0.33
VPS28-215ENST00000531924 REG4Q9BYZ8 158 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 TRIM2Q9C040 744 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 SAP130Q9H0E3 1048 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 EXOSC3Q9NQT5 275 aaKnown RBP13.02□□□□□ -0.33
VPS28-215ENST00000531924 ASB6Q9NWX5 421 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 BTNL2Q9UIR0 455 aa13.02□□□□□ -0.33
VPS28-215ENST00000531924 JMJD1CQ15652 2540 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 IGKV3D-15A0A087WSY6 115 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 TMED7-TICAM2A0A0A6YYA0 188 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 EIF1BO60739 113 aaKnown RBP13.01□□□□□ -0.33
VPS28-215ENST00000531924 RAMP1O60894 148 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 SCN2BO60939 215 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 NR2F1P10589 423 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 COX5AP20674 150 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 ZNF83P51522 516 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 POLR2HP52434 150 aaKnown RBP13.01□□□□□ -0.33
VPS28-215ENST00000531924 PHC1P78364 1004 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 SLC35A1P78382 337 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 TXNL4AP83876 142 aaKnown RBP13.01□□□□□ -0.33
VPS28-215ENST00000531924 LRRC74AQ0VAA2 488 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 CEP85LQ5SZL2 805 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 ABLIM2Q6H8Q1 611 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 SLC22A25Q6T423 547 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 CASP12Q6UXS9 341 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 DNAJC14Q6Y2X3 702 aaPredicted RBP13.01□□□□□ -0.33
VPS28-215ENST00000531924 SPATA19Q7Z5L4 167 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 CROCCP2Q86T23 111 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 CMIPQ8IY22 773 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 ZNF433Q8N7K0 673 aaPredicted RBP13.01□□□□□ -0.33
VPS28-215ENST00000531924 MAPK1IP1LQ8NDC0 245 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 ZG16BQ96DA0 208 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 ADAD1Q96M93 576 aaKnown RBP13.01□□□□□ -0.33
VPS28-215ENST00000531924 CCDC115Q96NT0 180 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 TRNT1Q96Q11 434 aaKnown RBP13.01□□□□□ -0.33
VPS28-215ENST00000531924 OR52E6Q96RD3 313 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 SORT1Q99523 831 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 OR11A1Q9GZK7 315 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 C20orf27Q9GZN8 174 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 SLCO5A1Q9H2Y9 848 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 MEAF6Q9HAF1 191 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 PNPOQ9NVS9 261 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 PARPBPQ9NWS1 579 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 TMEM181Q9P2C4 612 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 UPB1Q9UBR1 384 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 MGAT4BQ9UQ53 548 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 TMED7Q9Y3B3 224 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 RAI1Q7Z5J4 1906 aaPredicted RBP13.01□□□□□ -0.33
VPS28-215ENST00000531924 USF3Q68DE3 2245 aa13.01□□□□□ -0.33
VPS28-215ENST00000531924 FN1P02751 2386 aaKnown RBP13□□□□□ -0.33
VPS28-215ENST00000531924 HEATR5AQ86XA9 2040 aa13□□□□□ -0.33
VPS28-215ENST00000531924 CLDN24A6NM45 220 aa13□□□□□ -0.33
VPS28-215ENST00000531924 HMGN4O00479 90 aa13□□□□□ -0.33
VPS28-215ENST00000531924 BCAS1O75363 584 aaPredicted RBP13□□□□□ -0.33
VPS28-215ENST00000531924 PGM3O95394 542 aa13□□□□□ -0.33
VPS28-215ENST00000531924 DHRS4L1P0CG22 281 aa13□□□□□ -0.33
VPS28-215ENST00000531924 IL7RP16871 459 aa13□□□□□ -0.33
VPS28-215ENST00000531924 EDNRAP25101 427 aa13□□□□□ -0.33
VPS28-215ENST00000531924 ACVR1BP36896 505 aa13□□□□□ -0.33
VPS28-215ENST00000531924 UFM1P61960 85 aa13□□□□□ -0.33
VPS28-215ENST00000531924 SYPL1Q16563 259 aa13□□□□□ -0.33
VPS28-215ENST00000531924 PGGHGQ32M88 737 aa13□□□□□ -0.33
VPS28-215ENST00000531924 OR7E24Q6IFN5 339 aa13□□□□□ -0.33
VPS28-215ENST00000531924 PRIMA1Q86XR5 153 aa13□□□□□ -0.33
VPS28-215ENST00000531924 ADGRG3Q86Y34 549 aa13□□□□□ -0.33
VPS28-215ENST00000531924 CCDC103Q8IW40 242 aa13□□□□□ -0.33
VPS28-215ENST00000531924 ANKFN1Q8N957 763 aa13□□□□□ -0.33
VPS28-215ENST00000531924 ANKRD42Q8N9B4 389 aa13□□□□□ -0.33
VPS28-215ENST00000531924 WDR60Q8WVS4 1066 aa13□□□□□ -0.33
VPS28-215ENST00000531924 CNOT9Q92600 299 aaKnown RBP13□□□□□ -0.33
VPS28-215ENST00000531924 ZBTB9Q96C00 473 aa13□□□□□ -0.33
VPS28-215ENST00000531924 ARL5BQ96KC2 179 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms