RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 WDR60Q8WVS4 1066 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 IGFBPL1Q8WX77 278 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 CPNE4Q96A23 557 aaPredicted RBP9.46□□□□□ -0.9
CD44-227ENST00000528086 CPPED1Q9BRF8 314 aaPredicted RBP9.46□□□□□ -0.9
CD44-227ENST00000528086 PRRG4Q9BZD6 226 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 BCL2L10Q9HD36 194 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 A4GALTQ9NPC4 353 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 PAQR5Q9NXK6 330 aaPredicted RBP9.46□□□□□ -0.9
CD44-227ENST00000528086 CHRNA9Q9UGM1 479 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 PRSS50Q9UI38 385 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 DCTN4Q9UJW0 460 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 ZNF443Q9Y2A4 671 aaPredicted RBP9.46□□□□□ -0.9
CD44-227ENST00000528086 FLNAP21333 2647 aaKnown RBP9.46□□□□□ -0.9
CD44-227ENST00000528086 USF3Q68DE3 2245 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 ZFHX3Q15911 3703 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 IGKV3D-15A0A087WSY6 115 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 TMED7-TICAM2A0A0A6YYA0 188 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 FBP2O00757 339 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 TPST2O60704 377 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 PGM3O95394 542 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 PLAUP00749 431 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 DBIP07108 87 aaKnown RBP9.45□□□□□ -0.9
CD44-227ENST00000528086 YES1P07947 543 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 ARAFP10398 606 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 CD53P19397 219 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 CCNA2P20248 432 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 TACR3P29371 465 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 P2RY4P51582 365 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 ART1P52961 327 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 HOXC5Q00444 222 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 AGKQ53H12 422 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 SERPINA11Q86U17 422 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 CXorf67Q86X51 503 aaPredicted RBP9.45□□□□□ -0.9
CD44-227ENST00000528086 PTOV1Q86YD1 416 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 LRRC46Q96FV0 321 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 ZC3HAV1LQ96H79 300 aaKnown RBP9.45□□□□□ -0.9
CD44-227ENST00000528086 PRR14Q9BWN1 585 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 KLHL4Q9C0H6 718 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 RMND5AQ9H871 391 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 GLRX2Q9NS18 164 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 STOML1Q9UBI4 398 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 P2RX2Q9UBL9 471 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 TMED7Q9Y3B3 224 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 EMC9Q9Y3B6 208 aa9.45□□□□□ -0.9
CD44-227ENST00000528086 PLCE1Q9P212 2302 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 A0A1W2PP18 115 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 CFAP73A6NFT4 308 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 GJE1A6NN92 205 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 NPIPB7O75200 414 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 PRKD3O94806 890 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 IL7RP16871 459 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 GPX2P18283 190 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 PSMB1P20618 241 aaKnown RBP9.44□□□□□ -0.9
CD44-227ENST00000528086 HTR2AP28223 471 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 APOBEC1P41238 236 aaKnown RBP9.44□□□□□ -0.9
CD44-227ENST00000528086 SLC1A3P43003 542 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 OR3A2P47893 321 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 GZMMP51124 257 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 CRYBA2P53672 197 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 CTBP2P56545 445 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 EGR4Q05215 589 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 RASGEF1BQ0VAM2 473 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 SF3A3Q12874 501 aaKnown RBP eCLIP9.44□□□□□ -0.9
CD44-227ENST00000528086 BNIP2Q12982 314 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 SQLEQ14534 574 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 RNPS1Q15287 305 aaKnown RBP9.44□□□□□ -0.9
CD44-227ENST00000528086 RUNDC3AQ59EK9 446 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 RNF220Q5VTB9 566 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 MTDHQ86UE4 582 aaKnown RBP9.44□□□□□ -0.9
CD44-227ENST00000528086 DPP10Q8N608 796 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 ZIC4Q8N9L1 334 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 DYDC1Q8WWB3 177 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 TMEM234Q8WY98 164 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 PMM1Q92871 262 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 MBD6Q96DN6 1003 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 FOXC2Q99958 501 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 SLC39A3Q9BRY0 314 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 GP6Q9HCN6 339 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 NPHS2Q9NP85 383 aa9.44□□□□□ -0.9
CD44-227ENST00000528086 ZANQ9Y493 2812 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 A0A0G2JPF8 293 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.43□□□□□ -0.9
CD44-227ENST00000528086 ZNF724A8MTY0 619 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 TMEM229AB2RXF0 380 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 HNRNPCL2B2RXH8 293 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 HNRNPCL3B7ZW38 293 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 FXYD1O00168 92 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 SULT2B1O00204 365 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 ZNF208O43345 1280 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 HNRNPCL1O60812 293 aaKnown RBP9.43□□□□□ -0.9
CD44-227ENST00000528086 ANP32DO95626 131 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 PMS2P2O95744 297 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 PLGP00747 810 aaPredicted RBP9.43□□□□□ -0.9
CD44-227ENST00000528086 THBS1P07996 1170 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 PABPC4LP0CB38 370 aaKnown RBP9.43□□□□□ -0.9
CD44-227ENST00000528086 HNRNPCL4P0DMR1 293 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 IGHV1-2P23083 117 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 SLC7A1P30825 629 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 POLR2HP52434 150 aaKnown RBP9.43□□□□□ -0.9
CD44-227ENST00000528086 SLC16A1P53985 500 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms