RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 UBE2FQ969M7 185 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 NTNG2Q96CW9 530 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 ADNPQ9H2P0 1102 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 SLC25A19Q9HC21 320 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 RASSF1Q9NS23 344 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 SACM1LQ9NTJ5 587 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 TBC1D23Q9NUY8 699 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 MED17Q9NVC6 651 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 TMED7Q9Y3B3 224 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 HRH3Q9Y5N1 445 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 FAM47E-STBD1D6RA91 191 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 RCBTB2O95199 551 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 PRKAR1AP10644 381 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 FUT1P19526 365 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 DLX5P56178 289 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 TOP3AQ13472 1001 aaPredicted RBP19.09■□□□□ 0.65
VPS28-208ENST00000527797 INPP5JQ15735 1006 aaPredicted RBP19.09■□□□□ 0.65
VPS28-208ENST00000527797 KCTD21Q4G0X4 260 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 RBM48Q5RL73 367 aaKnown RBP19.09■□□□□ 0.65
VPS28-208ENST00000527797 SLC27A4Q6P1M0 643 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 TMEM154Q6P9G4 183 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 ARSKQ6UWY0 536 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 MDGA2Q7Z553 956 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 OAFQ86UD1 273 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 PLCZ1Q86YW0 608 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 FADS6Q8N9I5 356 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 OR8D4Q8NGM9 314 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 OR13C2Q8NGS9 318 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 FANK1Q8TC84 345 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 TSSK6Q9BXA6 273 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 PROK2Q9HC23 129 aa19.09■□□□□ 0.65
VPS28-208ENST00000527797 MPZL2O60487 215 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 HCN1O60741 890 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 SLC25A12O75746 678 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 CH25HO95992 272 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 APOBEC1P41238 236 aaKnown RBP19.08■□□□□ 0.65
VPS28-208ENST00000527797 MASP1P48740 699 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 SOX8P57073 446 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 ADGRG3Q86Y34 549 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 IQCF1Q8N6M8 205 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 RHOXF1Q8NHV9 184 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 UTP23Q9BRU9 249 aaKnown RBP19.08■□□□□ 0.65
VPS28-208ENST00000527797 TEX12Q9BXU0 123 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 OR52D1Q9H346 318 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 ZNF226Q9NYT6 803 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 FBXL2Q9UKC9 423 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 VDAC3Q9Y277 283 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 SIGLEC7Q9Y286 467 aa19.08■□□□□ 0.65
VPS28-208ENST00000527797 ZNF891A8MT65 544 aaPredicted RBP19.07■□□□□ 0.64
VPS28-208ENST00000527797 SNPHO15079 494 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 SUSD5O60279 629 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 PTP4A3O75365 173 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 SMNDC1O75940 238 aaKnown RBP eCLIP19.07■□□□□ 0.64
VPS28-208ENST00000527797 OR7A10O76100 309 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 BMP7P18075 431 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 WT1P19544 449 aaPredicted RBP19.07■□□□□ 0.64
VPS28-208ENST00000527797 CD96P40200 585 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 SLC9A3P48764 834 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 EGR4Q05215 589 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 ZBED5Q49AG3 693 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 CRTC2Q53ET0 693 aaPredicted RBP19.07■□□□□ 0.64
VPS28-208ENST00000527797 CLEC12AQ5QGZ9 265 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 LAIR2Q6ISS4 152 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 SMARCD3Q6STE5 483 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 PTCHD4Q6ZW05 846 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 C10orf53Q8N6V4 93 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 PSD4Q8NDX1 1056 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 OR52L1Q8NGH7 329 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 OR51A7Q8NH64 312 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 TMEM41AQ96HV5 264 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 SAMD8Q96LT4 415 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 TIMMDC1Q9NPL8 285 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 TVP23BQ9NYZ1 205 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 LRFN1Q9P244 771 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 AASSQ9UDR5 926 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 CEP250Q9BV73 2442 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 HEATR5AQ86XA9 2040 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 TMEM72A0PK05 275 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 G3V3Y1 287 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 ETV2O00321 342 aaPredicted RBP19.07■□□□□ 0.64
VPS28-208ENST00000527797 PLPPR5Q32ZL2 321 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 SLC25A53Q5H9E4 307 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 ACSM5Q6NUN0 579 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 OR1J4Q8NGS1 313 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 TRUB1Q8WWH5 349 aaKnown RBP19.07■□□□□ 0.64
VPS28-208ENST00000527797 FGF11Q92914 225 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 C1GALT1C1Q96EU7 318 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 MRGPRX4Q96LA9 322 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 TNFRSF13CQ96RJ3 184 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 SCNM1Q9BWG6 230 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 PRRG3Q9BZD7 231 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 BLOC1S6Q9UL45 172 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 POLHQ9Y253 713 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 ZNF337Q9Y3M9 751 aa19.07■□□□□ 0.64
VPS28-208ENST00000527797 TRAV27A0A087WT01 109 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 A8MVM7 634 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 CDK2AP1O14519 115 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 WISP1O95388 367 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 GABRB1P18505 474 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 SPINK2P20155 84 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms