RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	TPD52L3	Q96J77	140 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	NSMCE2	Q96MF7	247 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	TUBA1C	Q9BQE3	449 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	LRMDA	Q9H2I8	198 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	MMADHC	Q9H3L0	296 aa	Predicted RBP	18.67	■□□□□ 0.58
CD44-222	ENST00000526025	SLC5A6	Q9Y289	635 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	FAM215A	Q9Y5M1	114 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	RELN	P78509	3460 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	PDE5A	O76074	875 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	CXCR1	P25024	350 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	TRAP1	Q12931	704 aa	Known RBP	18.66	■□□□□ 0.58
CD44-222	ENST00000526025	B3GNT6	Q6ZMB0	384 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	CHMP1B	Q7LBR1	199 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	UBQLNL	Q8IYU4	475 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	SLC47A1	Q96FL8	570 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	HSH2D	Q96JZ2	352 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	TMEM185B	Q9H7F4	350 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	SELENON	Q9NZV5	590 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	CLCF1	Q9UBD9	225 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	HDGFL3	Q9Y3E1	203 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	ZNF175	Q9Y473	711 aa		18.66	■□□□□ 0.58
CD44-222	ENST00000526025	MED12L	Q86YW9	2145 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025		A0A0J9YW62	118 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	CLEC18A	A5D8T8	446 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	CCL21	O00585	134 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	EIF1AY	O14602	144 aa	Known RBP	18.65	■□□□□ 0.58
CD44-222	ENST00000526025	GSC2	O15499	205 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	SEC14L5	O43304	696 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	DNPH1	O43598	174 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	IFNW1	P05000	195 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	SLC7A1	P30825	629 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	MSX2	P35548	267 aa	Predicted RBP	18.65	■□□□□ 0.58
CD44-222	ENST00000526025	TIMP3	P35625	211 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	PER3	P56645	1201 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	SRY	Q05066	204 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	TMEM176B	Q3YBM2	270 aa	Predicted RBP	18.65	■□□□□ 0.58
CD44-222	ENST00000526025	ALG10B	Q5I7T1	473 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	ENTPD8	Q5MY95	495 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	C5orf46	Q6UWT4	87 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	CLEC18B	Q6UXF7	455 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	VTCN1	Q7Z7D3	282 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	CLEC18C	Q8NCF0	446 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	VANGL1	Q8TAA9	524 aa	Predicted RBP	18.65	■□□□□ 0.58
CD44-222	ENST00000526025	STK35	Q8TDR2	534 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	SLC38A4	Q969I6	547 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	DDIT4L	Q96D03	193 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	CADM1	Q9BY67	442 aa	Known RBP	18.65	■□□□□ 0.58
CD44-222	ENST00000526025	POTEKP	Q9BYX7	375 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	COQ10B	Q9H8M1	238 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	TIGAR	Q9NQ88	270 aa		18.65	■□□□□ 0.58
CD44-222	ENST00000526025	TMEM72	A0PK05	275 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	TRAPPC13	A5PLN9	417 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	MBD3L4	A6NDZ8	208 aa	Predicted RBP	18.64	■□□□□ 0.57
CD44-222	ENST00000526025	MBD3L3	A6NE82	208 aa	Predicted RBP	18.64	■□□□□ 0.57
CD44-222	ENST00000526025	MBD3L5	A6NJ08	208 aa	Predicted RBP	18.64	■□□□□ 0.57
CD44-222	ENST00000526025	CLCA1	A8K7I4	914 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025		A8MVM7	634 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	LRRTM2	O43300	516 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	CHP2	O43745	196 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	OR5F1	O95221	314 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	THRB	P10828	461 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	SHC1	P29353	583 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	SFTPD	P35247	375 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	HBM	Q6B0K9	141 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	FKBP9P1	Q75LS8	142 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	DHFR2	Q86XF0	187 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	RBM45	Q8IUH3	476 aa	Known RBP	18.64	■□□□□ 0.57
CD44-222	ENST00000526025	OR10D3	Q8NH80	312 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	18.64	■□□□□ 0.57
CD44-222	ENST00000526025	ADAMTS16	Q8TE57	1224 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	WNT2B	Q93097	391 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	CPNE4	Q96A23	557 aa	Predicted RBP	18.64	■□□□□ 0.57
CD44-222	ENST00000526025	MCUR1	Q96AQ8	359 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	MPP4	Q96JB8	637 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	CLPTM1L	Q96KA5	538 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	TTYH2	Q9BSA4	534 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	ALKBH4	Q9NXW9	302 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	SH3BGRL2	Q9UJC5	107 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	TRAPPC4	Q9Y296	219 aa		18.64	■□□□□ 0.57
CD44-222	ENST00000526025	USP9X	Q93008	2570 aa	Predicted RBP	18.63	■□□□□ 0.57
CD44-222	ENST00000526025		A0A087WUJ7	227 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	ELOA3D	A6NLF2	546 aa	Predicted RBP	18.63	■□□□□ 0.57
CD44-222	ENST00000526025		H0YC42	278 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	PYCARD-AS1	I3L0S3	204 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	ACOT8	O14734	319 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	TNFSF11	O14788	317 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	NPIPB7	O75200	414 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	STAMBP	O95630	424 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	PMS2P2	O95744	297 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	FCGR2A	P12318	317 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	TNFRSF1B	P20333	461 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	ATP6V1B2	P21281	511 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	OR1E2	P47887	323 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	TPD52	P55327	224 aa	Predicted RBP	18.63	■□□□□ 0.57
CD44-222	ENST00000526025	CARD18	P57730	90 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	RAC3	P60763	192 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	CSNK2A1	P68400	391 aa	Predicted RBP	18.63	■□□□□ 0.57
CD44-222	ENST00000526025	MS4A2	Q01362	244 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	GABPB1	Q06547	395 aa	Predicted RBP	18.63	■□□□□ 0.57
CD44-222	ENST00000526025	ELOA3B	Q3SY89	546 aa		18.63	■□□□□ 0.57

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