RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 RSBN1Q5VWQ0 802 aaPredicted RBP13.65□□□□□ -0.22
NUP54-217ENST00000514987 ARL9Q6T311 187 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 B3GLCTQ6Y288 498 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 SPATC1Q76KD6 591 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 Q8N402 240 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 FAM98AQ8NCA5 519 aaKnown RBP13.65□□□□□ -0.22
NUP54-217ENST00000514987 OR52E2Q8NGJ4 325 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 OR5M3Q8NGP4 307 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 ABHD4Q8TB40 342 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 ENKURQ8TC29 256 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 TP53INP1Q96A56 240 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 C4orf36Q96KX1 117 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 DCLRE1CQ96SD1 692 aaKnown RBP13.65□□□□□ -0.22
NUP54-217ENST00000514987 GAS2L1Q99501 681 aaPredicted RBP13.65□□□□□ -0.22
NUP54-217ENST00000514987 TTYH2Q9BSA4 534 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 NDEL1Q9GZM8 345 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 ERVMER34-1Q9H9K5 563 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 LMAN1LQ9HAT1 526 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 EXOSC3Q9NQT5 275 aaKnown RBP13.65□□□□□ -0.22
NUP54-217ENST00000514987 ENAMQ9NRM1 1142 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 UBQLN4Q9NRR5 601 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 SOHLH2Q9NX45 425 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 GMEB2Q9UKD1 530 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 CLDN16Q9Y5I7 305 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 C2orf92A0A1B0GVN3 265 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 HMX3A6NHT5 357 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 J3QLW9 94 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 HRKO00198 91 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 SSX4O60224 188 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 ADAM11O75078 769 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 OR7A10O76100 309 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 IL9P15248 144 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 ZNF19P17023 458 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 TALDO1P37837 337 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 GBX2P52951 348 aaPredicted RBP13.64□□□□□ -0.23
NUP54-217ENST00000514987 RACK1P63244 317 aaKnown RBP13.64□□□□□ -0.23
NUP54-217ENST00000514987 MAT1AQ00266 395 aaKnown RBP13.64□□□□□ -0.23
NUP54-217ENST00000514987 TDGQ13569 410 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 IL10RAQ13651 578 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 IL18Q14116 193 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 PON3Q15166 354 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 CARTPTQ16568 116 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 DMKNQ6E0U4 476 aaPredicted RBP13.64□□□□□ -0.23
NUP54-217ENST00000514987 WBP2NLQ6ICG8 309 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 OGFOD3Q6PK18 319 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 LRRC28Q86X40 367 aaPredicted RBP13.64□□□□□ -0.23
NUP54-217ENST00000514987 FAM71CQ8NEG0 241 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 MVB12AQ96EY5 273 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 ART5Q96L15 291 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 NEDD4LQ96PU5 975 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 CNN2Q99439 309 aaKnown RBP13.64□□□□□ -0.23
NUP54-217ENST00000514987 PHOX2BQ99453 314 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 TMEM43Q9BTV4 400 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 PHF7Q9BWX1 381 aaPredicted RBP13.64□□□□□ -0.23
NUP54-217ENST00000514987 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.64□□□□□ -0.237e-10■■■■■ 34.7
NUP54-217ENST00000514987 C11orf54Q9H0W9 315 aaPredicted RBP13.64□□□□□ -0.23
NUP54-217ENST00000514987 LRIT1Q9P2V4 623 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 DTX4Q9Y2E6 619 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 SLC6A5Q9Y345 797 aa13.64□□□□□ -0.23
NUP54-217ENST00000514987 SIRT4Q9Y6E7 314 aaPredicted RBP13.64□□□□□ -0.23
NUP54-217ENST00000514987 SHISA3A0PJX4 238 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 MEIOCA2RUB1 952 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 SMIM30A4D0T7 59 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 SYNDIG1LA6NDD5 238 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 FAM25AB3EWG3 89 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 FAM25CB3EWG5 89 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 FAM25GB3EWG6 89 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 TMEM150CB9EJG8 249 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 LMO7DNF2Z398 122 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 OGG1O15527 345 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 CDC123O75794 336 aaPredicted RBP13.63□□□□□ -0.23
NUP54-217ENST00000514987 WNT1P04628 370 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 MAOAP21397 527 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 CD1CP29017 333 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 RPL4P36578 427 aaKnown RBP13.63□□□□□ -0.23
NUP54-217ENST00000514987 DDOSTP39656 456 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 PPICP45877 212 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 MAP2K3P46734 347 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 INPP1P49441 399 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 PPM1FP49593 454 aaPredicted RBP13.63□□□□□ -0.23
NUP54-217ENST00000514987 DIO1P49895 249 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 HNRNPKP61978 463 aaKnown RBP eCLIP13.63□□□□□ -0.237e-6■□□□□ 8.5
NUP54-217ENST00000514987 ERV3-1Q14264 604 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 QPRTQ15274 297 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 SF3A2Q15428 464 aaKnown RBP13.63□□□□□ -0.23
NUP54-217ENST00000514987 FCRLBQ6BAA4 426 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 FAAH2Q6GMR7 532 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 NUP54Q7Z3B4 507 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 CEACAM19Q7Z692 300 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 PXKQ7Z7A4 578 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 TDHQ8IZJ6 230 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 CYB561A3Q8NBI2 242 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 LIPHQ8WWY8 451 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 PHYHIPQ92561 330 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 SLC46A1Q96NT5 459 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 OR1F2PQ96R84 312 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 GPX7Q96SL4 187 aaPredicted RBP13.63□□□□□ -0.23
NUP54-217ENST00000514987 MFRPQ9BY79 579 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 RNF121Q9H920 327 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 ZMIZ1Q9ULJ6 1067 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms