RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 KCNJ2P63252 427 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 CUL3Q13618 768 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 TSTA3Q13630 321 aaPredicted RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 MORF4L2Q15014 288 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 PPP1R3AQ16821 1122 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 AP5B1Q2VPB7 878 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 GLYR1Q49A26 553 aaPredicted RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 TIGD3Q6B0B8 471 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 ADAM5Q6NVV9 412 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 AADACL2Q6P093 401 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 SYT10Q6XYQ8 523 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 LRRC70Q7Z2Q7 622 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 NUP54Q7Z3B4 507 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 THOC6Q86W42 341 aaKnown RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 CPNE9Q8IYJ1 553 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 PDIK1LQ8N165 341 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 SLC35F6Q8N357 371 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 PTGR2Q8N8N7 351 aaPredicted RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 BANPQ8N9N5 519 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 TRPC4APQ8TEL6 797 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 C2CD4CQ8TF44 421 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 PTPMT1Q8WUK0 201 aaPredicted RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 NAT14Q8WUY8 206 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 RIT1Q92963 219 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 TSLPQ969D9 159 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 NCLNQ969V3 563 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 LINGO1Q96FE5 620 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 CMTM7Q96FZ5 175 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 CAPZA3Q96KX2 299 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 QRFPRQ96P65 431 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 DGAT2Q96PD7 388 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 TNFRSF13CQ96RJ3 184 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 DOHHQ9BU89 302 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 ANGPTL4Q9BY76 406 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 DERL2Q9GZP9 239 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 EXO5Q9H790 373 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 C10orf88Q9H8K7 445 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 NGBQ9NPG2 151 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 DEPPQ9NTK1 212 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 LYARQ9NX58 379 aaKnown RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 UPB1Q9UBR1 384 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 FBXO9Q9UK97 447 aaPredicted RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 PRDM4Q9UKN5 801 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 PSME2Q9UL46 239 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 KCNS2Q9ULS6 477 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 TMCO1Q9UM00 188 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 ICAM5Q9UMF0 924 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 R3HDM2Q9Y2K5 976 aaKnown RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 ZNF175Q9Y473 711 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 JRKLQ9Y4A0 524 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 CLDN16Q9Y5I7 305 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 CHCHD2Q9Y6H1 151 aaPredicted RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 SNRNP200O75643 2136 aaKnown RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 DNAH1Q9P2D7 4330 aa3.46□□□□□ -1.85
USP54-217ENST00000498213 ZNF407Q9C0G0 2248 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 IGHV4-30-2A0A087WSY4 118 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 GOLGA6L10A6NI86 522 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 SYCE1LA8MT33 242 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 A8MXE2 369 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 H0YIV9 168 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 H3BQF6 201 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 CDC7O00311 574 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 FOXE1O00358 373 aaPredicted RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 TO15178 435 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 ZSCAN12O43309 604 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 EMC8O43402 210 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 ERI3O43414 337 aaKnown RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 HCRTR2O43614 444 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 STK16O75716 305 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 CDC123O75794 336 aaPredicted RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 OR6B1O95007 311 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 FGGP02679 453 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 IFNA16P05015 189 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 PABPC4LP0CB38 370 aaKnown RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 IGHV4-31P0DP07 118 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 LYL1P12980 280 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 CHN1P15882 459 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 TNNI3P19429 210 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 IL11P20809 199 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 MAOAP21397 527 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 C21orf33P30042 268 aaPredicted RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 LCN1P31025 176 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 CDKN1AP38936 164 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 SOX3P41225 446 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 MAGEA5P43359 124 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 NAA20P61599 178 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 BTN3A2P78410 334 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 BTG2P78543 158 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 VLDLRP98155 873 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 GALNT1Q10472 559 aaPredicted RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 FUT7Q11130 342 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 NAB1Q13506 487 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 CRYMQ14894 314 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 RBBP5Q15291 538 aaKnown RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 PDK4Q16654 411 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 TIGD6Q17RP2 521 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 KBTBD12Q3ZCT8 623 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 BEX5Q5H9J7 111 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 TCHHL1Q5QJ38 904 aaPredicted RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 C6orf163Q5TEZ5 329 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms