RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 VPS35Q96QK1 796 aa2.55□□□□□ -2
PTPN4-212ENST00000488896 OR11A1Q9GZK7 315 aa2.55□□□□□ -2
PTPN4-212ENST00000488896 PDS5BQ9NTI5 1447 aa2.55□□□□□ -2
PTPN4-212ENST00000488896 SOHLH2Q9NX45 425 aa2.55□□□□□ -2
PTPN4-212ENST00000488896 GNPTGQ9UJJ9 305 aa2.55□□□□□ -2
PTPN4-212ENST00000488896 TRAF3IP3Q9Y228 551 aa2.55□□□□□ -2
PTPN4-212ENST00000488896 V9GY05 133 aa2.55□□□□□ -2
PTPN4-212ENST00000488896 E7ESA3 106 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 UGT2B17O75795 530 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 RETP07949 1114 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 TSPY4P0CV99 314 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 TSPY10P0CW01 314 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 CYP2B6P20813 491 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 UQCRC2P22695 453 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 LEPP41159 167 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 TFPI2P48307 235 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 EFNB2P52799 333 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 NSUN5P1Q3KNT7 163 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 LINC01620Q4KN68 170 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 C12orf60Q5U649 245 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 ZNF621Q6ZSS3 439 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 CENPUQ71F23 418 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 BRSK1Q8TDC3 778 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 TCTEX1D2Q8WW35 142 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 GIMAP1Q8WWP7 306 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 TIMD4Q96H15 378 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 TSNARE1Q96NA8 513 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 NAT9Q9BTE0 207 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 CALHM2Q9HA72 323 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 SLC25A37Q9NYZ2 338 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 TRAPPC4Q9Y296 219 aa2.54□□□□□ -2
PTPN4-212ENST00000488896 CLSPNQ9HAW4 1339 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 IGHV2-70DA0A0C4DH43 119 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 A0A0G2JLM5 398 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 A0A0U1RQV5 110 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 E9PBE3 544 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 SDHDO14521 159 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 CA1P00915 261 aaPredicted RBP2.53□□□□□ -2
PTPN4-212ENST00000488896 OPN1LWP04000 364 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 MRPL3P09001 348 aaKnown RBP2.53□□□□□ -2
PTPN4-212ENST00000488896 ANXA13P27216 316 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 KIF5BP33176 963 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 NMUP48645 174 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 SPP2Q13103 211 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 PPP2R5CQ13362 524 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 FAM83EQ2M2I3 478 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 KLF17Q5JT82 389 aaPredicted RBP2.53□□□□□ -2
PTPN4-212ENST00000488896 KRTAP5-7Q6L8G8 165 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 TMIGD1Q6UXZ0 262 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 GCNT2Q8N0V5 402 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 C6orf223Q8N319 242 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 KIR3DL3Q8N743 410 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 ZNF713Q8N859 430 aaPredicted RBP2.53□□□□□ -2
PTPN4-212ENST00000488896 OR9G1Q8NH87 305 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 DEDD2Q8WXF8 326 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 ST8SIA1Q92185 356 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 SAMD8Q96LT4 415 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 HIST1H4GQ99525 98 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 SLC6A7Q99884 636 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 ING2Q9H160 280 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 VAT1LQ9HCJ6 419 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 ALG6Q9Y672 507 aa2.53□□□□□ -2
PTPN4-212ENST00000488896 SPAG9O60271 1321 aaKnown RBP2.52□□□□□ -2.01
PTPN4-212ENST00000488896 IDSB3KWA1 339 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 HCRTR1O43613 425 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 VPS26AO75436 327 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 IGLV3-19P01714 112 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 FUT1P19526 365 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 KPNA2P52292 529 aaKnown RBP2.52□□□□□ -2.01
PTPN4-212ENST00000488896 EWSR1Q01844 656 aaKnown RBP eCLIP2.52□□□□□ -2.01
PTPN4-212ENST00000488896 PARP10Q53GL7 1025 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 ZNF311Q5JNZ3 666 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 DPY19L4Q7Z388 723 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 ZNF571Q7Z3V5 609 aaPredicted RBP2.52□□□□□ -2.01
PTPN4-212ENST00000488896 TPRA1Q86W33 373 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 MISPQ8IVT2 679 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 ZNF615Q8N8J6 731 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 ATP6V0D2Q8N8Y2 350 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 ZNF709Q8N972 641 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 OR6C4Q8NGE1 309 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 OR52B4Q8NGK2 314 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 OR5L2Q8NGL0 311 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 MGARPQ8TDB4 240 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 ROGDIQ9GZN7 287 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 CDC42EP4Q9H3Q1 356 aaKnown RBP2.52□□□□□ -2.01
PTPN4-212ENST00000488896 DMAP1Q9NPF5 467 aaPredicted RBP2.52□□□□□ -2.01
PTPN4-212ENST00000488896 ZDHHC4Q9NPG8 344 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 LHX9Q9NQ69 397 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 SCN2AQ99250 2005 aa2.52□□□□□ -2.01
PTPN4-212ENST00000488896 PPIAL4EA0A075B759 164 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 IGKV1D-8A0A087WSZ0 117 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 PPIAL4CA0A0B4J2A2 164 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 PPIAL4DF5H284 164 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 PPIAL4FP0DN26 164 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 CXCR2P25025 360 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 VDAC2P45880 294 aaPredicted RBP2.51□□□□□ -2.01
PTPN4-212ENST00000488896 HSF2Q03933 536 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 ZNF763Q0D2J5 394 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 CEBPEQ15744 281 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 TRIM16LQ309B1 348 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms